Co-expression analysis

Gene ID	HA31E10r_s_at
Gene name
Homology with Arabidopsis	Similar to At4g15620: integral membrane family protein (HF=1e+0)
Module size	6 genes
NF	0.51
%ile	71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.96	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	rbah27b21_s_at	rbah27b21	-	-	5e+0	At5g55970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	EBma03_SQ003_G07_s_at	EBma03_SQ003_G07	-	-	2e+0	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig16156_s_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig18051_at	Contig18051	-	-	4e-1	At1g75250	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.3	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.1	99.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.2	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.4	97.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.4	96.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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