Co-expression analysis

Gene ID	HA12N13u_s_at
Gene name
Homology with Arabidopsis	Similar to At1g54250: NRPB8A (HF=5e-2)
Module size	21 genes
NF	0.35
%ile	47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	85.1	0.95	HA12N13u_s_at	HA12N13u	-	-	5e-2	At1g54250	NRPB8A	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig5228_s_at	Contig5228	-	-	2e-17	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig4873_s_at	Contig4873	-	-	4e+0	At5g17847	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig4107_s_at	Contig4107	-	-	2e-1	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig12913_at	Contig12913	-	-	6e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig19458_at	Contig19458	-	-	2e+0	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.97	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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