Co-expression analysis

Gene ID	GmaAffx.99.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to Atcg00800: - (HF=1e-102)
Module size	6 genes
NF	0.07
%ile	21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	78.8	0.95	GmaAffx.99.1.S1_s_at	BI942859	-	-	1e-102	Atcg00800	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.94	GmaAffx.87677.1.S1_at	BU080975	-	-	6e-11	Atcg01130	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	GmaAffx.35134.1.S1_at	BM892966	-	-	1e-5	Atcg01130	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	GmaAffx.80255.4.S1_at	AW202110	-	-	7e-32	Atcg00500	-	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.95	GmaAffx.5291.1.S1_at	AW569952	-	-	1e-63	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.95	GmaAffx.73480.1.S1_at	BM092359	-	-	4e-1	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	98.4	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.5	98.3	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.4	98.2	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.2	98.1	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.1	98.1	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.9	98.0	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.6	97.7	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.5	97.7	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.5	97.7	GSM236910	Soybean_nonapicalmeristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.3	97.5	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.2	97.4	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.2	97.4	GSM170929	Rust Innoculated, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.1	97.3	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.1	97.3	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.8	97.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.5	96.6	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.4	96.4	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.4	96.4	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.4	96.4	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.1	95.8	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.0	95.6	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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