Co-expression analysis

Gene ID	GmaAffx.93393.1.S1_s_at
Gene name	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2
Homology with Arabidopsis	Similar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=6e-22)
Module size	7 genes
NF	0.43
%ile	73.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	0.99	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.1278.1.S1_a_at	BE020433	-	-	4e-20	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.17053.5.S1_s_at	BM309062	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	2e-48	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.99	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.99	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3633.8.A1_at, orthologous to the query gene, GmaAffx.93393.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.3633.8.A1_at	At1g07890	-	-	7e-29	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.677.1.A1_at	At1g07890	diphosphonucleotide phosphatase 2	-	2e-7	At3g14890	phosphoesterase	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.13701.1.A1_at	At1g07890	hypothetical protein LOC100274153	-	1e-14	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.13811.1.A1_at	At1g07890	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.810.1.S1_at	At1g07890	-	-	6e-69	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.14479.1.S1_a_at	At1g07890	S-adenosyl methionine decarboxylase2	-	1e+0	At5g15950	adenosylmethionine decarboxylase family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.5922.1.A1_at	At1g07890	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.19306.1.A1_at	At1g07890	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.17990.1.S1_at	At1g07890	hypothetical protein LOC100275286	-	2e+0	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.867.1.A1_at	At1g07890	hypothetical protein LOC100273308	-	4e-8	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.4209.1.A1_at	At1g07890	hypothetical protein LOC100191198	-	2e-5	At5g37370	ATSRL1	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.16904.2.A1_x_at	At1g07890	-	-	6e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.1056.1.S1_at	At1g07890	ribosomal protein S22 homolog	-	3e-17	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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