Co-expression analysis

Gene ID	GmaAffx.93393.1.S1_s_at
Gene name	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2
Homology with Arabidopsis	Similar to At1g07890: APX1 (ascorbate peroxidase 1) (HF=6e-22)
Module size	7 genes
NF	0.43
%ile	73.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	0.99	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.1278.1.S1_a_at	BE020433	-	-	4e-20	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.17053.5.S1_s_at	BM309062	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	2e-48	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	Gma.13160.1.S1_at	L10292.1	ascorbate peroxidase 1, cytosolic	-	5e-23	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.99	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.99	Gma.10826.5.S1_x_at	BM732455	-	-	2e-108	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112576.1.S1_at, orthologous to the query gene, GmaAffx.93393.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	TaAffx.112576.1.S1_at	At1g07890	-	-	2e-2	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.28748.3.S1_a_at	At1g07890	-	-	1e-9	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.9183.2.S1_a_at	At1g07890	-	-	5e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.9259.2.S1_a_at	At1g07890	-	-	4e+0	At5g17070	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.6415.1.S1_s_at	At1g07890	-	-	1e+0	At1g48960	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.23038.2.S1_at	At1g07890	-	-	1e+0	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.28748.3.S1_x_at	At1g07890	-	-	1e-9	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.20349.2.S1_x_at	At1g07890	-	-	3e+0	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.5608.1.S1_s_at	At1g07890	-	-	3e-24	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.52373.1.S1_s_at	At1g07890	-	-	7e-8	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.6182.2.S1_at	At1g07890	-	-	4e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.3598.2.S1_at	At1g07890	-	-	4e+0	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1531.2.S1_a_at	At1g07890	-	-	3e+0	At5g39230	transcription initiation factor-related	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.51801.1.S1_x_at	At1g07890	-	-	4e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.14429.3.S1_x_at	At1g07890	-	-	1e-12	At1g77440	PBC2	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.7772.2.S1_a_at	At1g07890	-	-	2e-7	At2g43770	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.119272.1.S1_at	At1g07890	-	-	9e-1	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3303.1.S1_at	At1g07890	-	-	7e-13	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.5314.3.S1_a_at	At1g07890	-	-	3e-35	At2g30970	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.12422.1.S1_at	At1g07890	-	-	1e+0	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.6182.2.S1_a_at	At1g07890	-	-	4e-3	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.7248.1.S1_a_at	At1g07890	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.24351.1.S1_s_at	At1g07890	-	-	1e+1	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.28907.2.S1_a_at	At1g07890	-	-	5e-21	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.28699.3.S1_a_at	At1g07890	-	-	5e-6	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.2846.1.S1_at	At1g07890	-	-	7e-20	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.24961.2.S1_x_at	At1g07890	BBC1-like protein	-	6e-32	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.14551.2.S1_a_at	At1g07890	-	-	2e+1	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.24961.1.S1_x_at	At1g07890	BBC1-like protein	-	8e-22	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.27448.1.S1_s_at	At1g07890	cyc07	-	5e-29	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.29179.1.S1_at	At1g07890	-	-	7e-5	At1g72340	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.20391.3.S1_x_at	At1g07890	-	-	1e-6	At4g16450	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.130141.1.S1_at	At1g07890	-	-	7e+0	At4g14746	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.23053.1.S1_a_at	At1g07890	-	-	8e-33	At1g73230	nascent polypeptide-associated complex (NAC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.2605.1.S1_a_at	At1g07890	-	-	3e-5	At3g45030	40S ribosomal protein S20 (RPS20A)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.807.1.S1_a_at	At1g07890	ribosomal protein L13a	-	7e-16	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.24735.1.S1_at	At1g07890	-	-	1e-97	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.28696.1.S1_x_at	At1g07890	-	-	1e-7	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.122005.1.S1_at	At1g07890	-	-	3e-6	At5g24840	tRNA (guanine-N7-)-methyltransferase	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.2227.1.S1_a_at	At1g07890	-	-	3e-15	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.77638.1.S1_at	At1g07890	-	-	7e-1	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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