CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.93335.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At3g13920: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) (HF=7e-52)

Module size 8 genes

NF 0.18

%ile 40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 93.4 0.97 GmaAffx.93335.1.S1_s_at CF806304 - - 7e-52 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) O.I. H.G. S.X.
0.42 59.3 0.98 Gma.5783.3.S1_a_at BM271247 - - 1e-59 At5g55260 PPX2 (PROTEIN PHOSPHATASE X 2) O.I. H.G. S.X.
0.33 46.1 0.97 GmaAffx.85706.1.S1_at BG882274 - - 3e-30 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein O.I. H.G. S.X.
0.16 19.7 0.98 Gma.6196.2.S1_a_at BI972744 - - 2e-35 At2g14120 dynamin-like protein 2b (ADL2b) O.I. H.G. S.X.
0.13 16.3 0.98 GmaAffx.22482.1.S1_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) O.I. H.G. S.X.
0.11 14.2 0.98 GmaAffx.63395.2.S1_s_at BF597240 - - 2e-1 At1g49310 unknown protein O.I. H.G. S.X.
0.09 12.0 0.98 Gma.9193.1.S1_at BE473615 - - 1e-22 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.
0.09 12.0 0.98 GmaAffx.8247.1.S1_at AW311073 - - 1e+0 At4g30680 MA3 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.268.1.A1_at, orthologous to the query gene, GmaAffx.93335.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 Zm.268.1.A1_at At3g13920 eukaryotic initiation factor 4A - 1e-110 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) O.I. H.G. S.X.
0.93 99.3 Zm.3468.1.A1_at At3g13920 FYVE zinc finger family protein - 1e-2 At2g26210 ankyrin repeat family protein O.I. H.G. S.X.
0.92 99.2 Zm.6139.2.A1_at At3g13920 methionyl-tRNA synthetase - 1e-5 At2g40660 tRNA-binding region domain-containing protein O.I. H.G. S.X.
0.89 96.8 Zm.6467.1.A1_at At3g13920 - - 2e+0 At5g59470 PQ-loop repeat family protein / transmembrane family protein O.I. H.G. S.X.
0.83 95.6 Zm.6367.1.S1_at At3g13920 - - 3e-1 At4g26200 ACS7 O.I. H.G. S.X.
0.80 94.0 Zm.6945.1.A1_at At3g13920 vacuolar proton pump3 - 2e-101 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.77 92.1 Zm.4882.2.S1_at At3g13920 - - 9e+0 At3g62920 unknown protein O.I. H.G. S.X.
0.76 91.1 Zm.6316.1.A1_at At3g13920 - - 2e+0 At5g22430 unknown protein O.I. H.G. S.X.
0.75 90.8 Zm.16508.2.A1_at At3g13920 60S ribosomal protein L39 /// ribosomal protein L39 - 1e-15 At4g31985 60S ribosomal protein L39 (RPL39C) O.I. H.G. S.X.
0.74 90.3 Zm.4746.1.A1_at At3g13920 - - 3e-3 At1g58030 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) O.I. H.G. S.X.
0.74 90.3 Zm.14071.1.A1_at At3g13920 hypothetical protein LOC100279213 - 2e-16 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein O.I. H.G. S.X.
0.63 81.1 Zm.14806.1.A1_at At3g13920 hypothetical protein LOC100217201 - 1e-31 At1g66340 ETR1 (ETHYLENE RESPONSE 1) O.I. H.G. S.X.
0.61 79.5 Zm.2176.1.S1_at At3g13920 - - 4e+0 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.57 75.1 Zm.7411.1.A1_at At3g13920 hypothetical protein LOC100277462 - 2e+0 At2g14390 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage