Co-expression analysis

Gene ID	GmaAffx.93335.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g13920: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) (HF=7e-52)
Module size	8 genes
NF	0.18
%ile	40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	93.4	0.97	GmaAffx.93335.1.S1_s_at	CF806304	-	-	7e-52	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.5783.3.S1_a_at	BM271247	-	-	1e-59	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.85706.1.S1_at	BG882274	-	-	3e-30	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	Gma.6196.2.S1_a_at	BI972744	-	-	2e-35	At2g14120	dynamin-like protein 2b (ADL2b)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.98	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	GmaAffx.63395.2.S1_s_at	BF597240	-	-	2e-1	At1g49310	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	Gma.9193.1.S1_at	BE473615	-	-	1e-22	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	GmaAffx.8247.1.S1_at	AW311073	-	-	1e+0	At4g30680	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.113015.1.S1_at, orthologous to the query gene, GmaAffx.93335.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.113015.1.S1_at	At3g13920	-	-	3e-53	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.15964.2.S1_at	At3g13920	-	-	1e-3	At1g06400	ARA-2	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.13203.2.S1_at	At3g13920	-	-	3e-1	At3g01700	AGP11	O.I.	H.G.	S.X.	Please select
0.01	2.4	TaAffx.108274.5.S1_at	At3g13920	-	-	3e-19	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.00	0.7	TaAffx.85507.1.S1_s_at	At3g13920	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.00	0.7	TaAffx.32174.1.S1_at	At3g13920	-	-	1e+0	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage