CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.93335.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At3g13920: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) (HF=7e-52)

Module size 8 genes

NF 0.18

%ile 40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 93.4 0.97 GmaAffx.93335.1.S1_s_at CF806304 - - 7e-52 At3g13920 EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) O.I. H.G. S.X.
0.42 59.3 0.98 Gma.5783.3.S1_a_at BM271247 - - 1e-59 At5g55260 PPX2 (PROTEIN PHOSPHATASE X 2) O.I. H.G. S.X.
0.33 46.1 0.97 GmaAffx.85706.1.S1_at BG882274 - - 3e-30 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein O.I. H.G. S.X.
0.16 19.7 0.98 Gma.6196.2.S1_a_at BI972744 - - 2e-35 At2g14120 dynamin-like protein 2b (ADL2b) O.I. H.G. S.X.
0.13 16.3 0.98 GmaAffx.22482.1.S1_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) O.I. H.G. S.X.
0.11 14.2 0.98 GmaAffx.63395.2.S1_s_at BF597240 - - 2e-1 At1g49310 unknown protein O.I. H.G. S.X.
0.09 12.0 0.98 Gma.9193.1.S1_at BE473615 - - 1e-22 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.
0.09 12.0 0.98 GmaAffx.8247.1.S1_at AW311073 - - 1e+0 At4g30680 MA3 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0701100, orthologous to the query gene, GmaAffx.93335.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 Os06g0701100 At3g13920 - Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) 1e-135 At1g54270 EIF4A-2 O.I. H.G. S.X.
0.85 96.1 Os04g0349500 At3g13920 - 40S ribosomal protein S8 4e-51 At5g59240 40S ribosomal protein S8 (RPS8B) O.I. H.G. S.X.
0.82 95.0 Os01g0348700 At3g13920 - 60S ribosomal protein L23a (L25) 3e-51 At2g39460 RPL23AA (RIBOSOMAL PROTEIN L23AA) O.I. H.G. S.X.
0.73 91.1 Os03g0576700 At3g13920 - 60S ribosomal protein L13 (BBC1 protein homolog) 8e-31 At5g23900 60S ribosomal protein L13 (RPL13D) O.I. H.G. S.X.
0.72 89.8 Os02g0287000 At3g13920 - 40S ribosomal protein S3a (CYC07 protein) 4e-14 At4g34670 40S ribosomal protein S3A (RPS3aB) O.I. H.G. S.X.
0.69 87.9 Os08g0326400 At3g13920 - 60S ribosomal protein L7a 2e-65 At3g62870 60S ribosomal protein L7A (RPL7aB) O.I. H.G. S.X.
0.63 82.7 Os01g0679700 At3g13920 - 60S ribosomal protein L37a 1e-15 At3g10950 60S ribosomal protein L37a (RPL37aB) O.I. H.G. S.X.
0.57 77.0 Os04g0398900 At3g13920 - Hypothetical protein 5e-25 At3g61110 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) O.I. H.G. S.X.
0.54 71.9 Os07g0662500 At3g13920 - Elongation factor 1-beta' (EF-1-beta') 8e-25 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative O.I. H.G. S.X.
0.45 58.8 Os07g0622100 At3g13920 - Ribosomal protein s6 RPS6-2 5e-69 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) O.I. H.G. S.X.
0.44 58.1 Os01g0815800 At3g13920 - - 2e-31 At3g53020 STV1 (SHORT VALVE1) O.I. H.G. S.X.
0.42 53.9 Os03g0337800 At3g13920 - 60S ribosomal protein L19 (Fragment) 2e-43 At1g02780 emb2386 (embryo defective 2386) O.I. H.G. S.X.
0.36 44.0 Os10g0170200 At3g13920 - Ribosomal protein S10 family protein 4e-16 At5g62300 40S ribosomal protein S20 (RPS20C) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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