Co-expression analysis

Gene ID	GmaAffx.93335.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g13920: EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) (HF=7e-52)
Module size	8 genes
NF	0.18
%ile	40.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	93.4	0.97	GmaAffx.93335.1.S1_s_at	CF806304	-	-	7e-52	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.5783.3.S1_a_at	BM271247	-	-	1e-59	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.85706.1.S1_at	BG882274	-	-	3e-30	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	Gma.6196.2.S1_a_at	BI972744	-	-	2e-35	At2g14120	dynamin-like protein 2b (ADL2b)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.98	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	GmaAffx.63395.2.S1_s_at	BF597240	-	-	2e-1	At1g49310	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	Gma.9193.1.S1_at	BE473615	-	-	1e-22	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	GmaAffx.8247.1.S1_at	AW311073	-	-	1e+0	At4g30680	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g13920, orthologous to the query gene, GmaAffx.93335.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.	Other DB
0.40	50.8	At3g13920	820605	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	eukaryotic translation initiation factor 4A-1	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.44	57.2	At4g33250	829461	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	Encodes initiation factor 3k (EIF3k).	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.29	30.3	At5g19510	832071	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	F:translation elongation factor activity;P:translational elongation, defense response to bacterium;C:apoplast, eukaryotic translation elongation factor 1 complex;MOPFB	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.21	15.8	At2g09990	815456	40S ribosomal protein S16 (RPS16A)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast, membrane;BOMAFP	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)
0.15	7.8	At4g00100	828167	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development	O.I.	H.G.	S.X.	Please selectTAIR (integral)KEGG (integral)PlantTribes (integral)Gramene (integral)MPSS (genome)InParanoid (ortholog)Plant RBP (ortholog)SIGnAL (T-DNA)RAFL (full-length clone)AtGDB (genome)Genevestigator (expression)eFP Browser (expression)AVT (expression)ATTED-II (co-expression)AtcisDB (cis-element)SUBA (hydropathy)AtProteomePlant Proteome DatabasePMN (pathway)KaPPA-View 4 (pathway)RnR (over-expression)iHOP (report)

Select a plant to compare co-expressed genes between species.

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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