Co-expression analysis

Gene ID	GmaAffx.93286.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=1e-6)
Module size	22 genes
NF	0.73
%ile	96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	0.59	GmaAffx.93286.1.S1_at	CF807610	-	-	1e-6	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.90	93.7	0.75	Gma.53.1.S1_at	M80664.1	maturation polypeptide	-	2e-4	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.89	93.5	0.73	GmaAffx.43575.1.S1_at	AW119723	-	-	8e+0	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.81	Gma.8489.1.S1_s_at	AB030493.1	thiamin biosynthetic enzyme /// thiamin biosynthetic enzyme	-	5e-51	At5g54770	THI1	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.72	Gma.2919.1.S1_at	BM269717	-	-	6e-1	At3g55420	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.81	Gma.1545.1.A1_at	CD410619	-	-	8e-14	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.74	GmaAffx.6533.1.A1_at	BU550258	-	-	1e+0	At5g03510	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.72	Gma.1159.1.S1_at	BM527453	-	-	6e-1	Atcg01000	-	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.71	GmaAffx.61901.1.S1_at	AW152953	-	-	1e+1	At5g09440	EXL4 (EXORDIUM LIKE 4)	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.81	Gma.504.1.S1_at	BM525623	-	-	6e-1	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.70	Gma.1096.1.S1_at	CD407195	-	-	4e-4	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.70	Gma.3033.1.S1_at	BM307084	-	-	7e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.75	GmaAffx.15815.1.A1_at	CD409726	-	-	7e-1	Atcg00820	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.70	GmaAffx.79221.1.S1_at	BU925861	-	-	8e-22	At1g64110	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.74	Gma.2935.1.S1_at	BE821167	-	-	1e+0	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.77	GmaAffx.2351.1.S1_at	AI856735	-	-	4e-1	At5g19830	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.74	GmaAffx.74663.1.S1_at	BU965000	-	-	2e-1	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.73	GmaAffx.88661.1.A1_at	CD413777	-	-	3e+0	At1g05835	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.70	Gma.8490.1.S1_at	AB030492.1	thiamin biosynthetic enzyme	-	1e-51	At5g54770	THI1	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.70	GmaAffx.33409.1.A1_at	BU547094	-	-	3e-1	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.69	Gma.4331.2.S1_at	BE658569	-	-	1e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.75	GmaAffx.14927.1.S1_at	BQ627487	-	-	7e-3	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.8	99.8	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
21.4	99.8	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
16.8	99.7	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
16.5	99.6	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
15.1	99.6	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
12.6	99.5	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
11.8	99.4	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM147936	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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