Co-expression analysis

Gene ID GmaAffx.93176.1.S1_s_at
Gene name expansin
Homology with ArabidopsisSimilar to At2g28950: ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) (HF=2e-24)
Module size 6 genes
NF 0.37
%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.20.88GmaAffx.93176.1.S1_s_atCF808901expansin-2e-24At2g28950ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)O.I.H.G.S.X.
0.5071.70.93Gma.2590.8.S1_atBM093439--2e-47At5g48300ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)O.I.H.G.S.X.
0.3650.80.93Gma.2119.3.S1_atBQ253050--2e-51At5g03650SBE2.2 (starch branching enzyme 2.2)O.I.H.G.S.X.
0.3548.60.93GmaAffx.17650.3.S1_atAW202246homogentisate phytyltransferase VTE2-2-2e-1At3g06040ribosomal protein L12 family proteinO.I.H.G.S.X.
0.2228.10.93GmaAffx.17213.1.S1_atBU546744--2e-36At2g28000CPN60A (CHAPERONIN-60ALPHA)O.I.H.G.S.X.
0.1923.70.94GmaAffx.91779.1.S1_s_atCF807504glutamate 1-semialdehyde aminotransferase-9e-48At5g63570GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.4GSM209581susceptible_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
11.099.4GSM245938Leaf_LCO treated_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
10.499.3GSM245937Leaf_LCO treated_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
10.399.3GSM245935Leaf_Water Control_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
9.799.3GSM209580resistant_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
9.699.2GSM209582mock_0hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
9.299.2GSM209590susceptible_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
9.099.2GSM245936Leaf_LCO treated_Rep 1_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
8.599.1GSM238041Soybean-Bayfield-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.299.0GSM245934Leaf_Water Control_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
8.099.0GSM245933Leaf_Water Control_Rep 1_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
7.598.9GSM238038Soybean-Bayfield-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.498.9GSM238031Soybean-2601R-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.398.9GSM238052Soybean-PS46R-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.198.8GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
6.498.6GSM238039Soybean-Bayfield-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
6.298.6GSM238055Soybean-PS46R-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
6.098.5GSM170924V2 Control, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
5.898.4GSM209589resistant_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.898.4GSM238060Soybean-S03W4-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
5.798.4GSM238048Soybean-Mandarin-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
5.598.3GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.598.3GSM170927Rust Innoculated, biological rep2GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
5.298.1GSM238033Soybean-2601R-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
5.298.1GSM236910Soybean_nonapicalmeristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.198.1GSM238036Soybean-Bayfield-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
5.198.1GSM170926Rust Innoculated, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
4.897.9GSM238054Soybean-PS46R-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.797.8GSM238053Soybean-PS46R-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.797.8GSM238043Soybean-Bayfield-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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