Co-expression analysis

Gene ID GmaAffx.93046.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62520: SRO5 (SIMILAR TO RCD ONE 5) (HF=3e-1)
Module size 6 genes
NF 0.56
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.30.95GmaAffx.93046.1.S1_atCF808771--3e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.7790.30.94GmaAffx.36250.1.S1_s_atBG551078--2e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.4463.30.96GmaAffx.78968.2.S1_atBM188587--9e-13At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4057.10.96GmaAffx.59154.1.S1_atBG508624--7e+0At4g37685unknown proteinO.I.H.G.S.X.
0.3650.80.96GmaAffx.87526.1.S1_atBM954581--6e+0At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
0.2939.00.95Gma.3639.1.S1_atAB083030.1syringolide-induced protein B15-3-5-1e-4At2g38600acid phosphatase class B family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.5GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.095.6GSM29248784_1251.1G.R158L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.860.1.A1_at, orthologous to the query gene, GmaAffx.93046.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.860.1.A1_atAt5g62520--1e+0At1g32980subtilisin-like serine protease-relatedO.I.H.G.S.X.
0.7389.9Zm.9421.1.S1_atAt5g62520hypothetical protein LOC100216648-4e-2At3g27380SDH2-1O.I.H.G.S.X.
0.6785.8Zm.4312.1.A1_atAt5g62520hypothetical protein LOC100274657-5e+0At3g63020unknown proteinO.I.H.G.S.X.
0.5571.6Zm.5902.1.A1_atAt5g62520glyoxalase/bleomycin resistance protein/dioxygenase-2e+0At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.5065.7Zm.1066.4.A1_atAt5g62520hypothetical protein LOC100274112-1e-8At1g21720PBC1 (PROTEASOME BETA SUBUNIT C1)O.I.H.G.S.X.
0.4048.5Zm.9364.1.A1_atAt5g62520--6e+0At4g29540bacterial transferase hexapeptide repeat-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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