Co-expression analysis

Gene ID	GmaAffx.93046.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62520: SRO5 (SIMILAR TO RCD ONE 5) (HF=3e-1)
Module size	6 genes
NF	0.56
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	0.95	GmaAffx.93046.1.S1_at	CF808771	-	-	3e-1	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.94	GmaAffx.36250.1.S1_s_at	BG551078	-	-	2e-1	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.96	GmaAffx.78968.2.S1_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	GmaAffx.59154.1.S1_at	BG508624	-	-	7e+0	At4g37685	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	GmaAffx.87526.1.S1_at	BM954581	-	-	6e+0	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	Gma.3639.1.S1_at	AB083030.1	syringolide-induced protein B15-3-5	-	1e-4	At2g38600	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.5	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM292487	84_1251.1G.R158L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1620801_at, orthologous to the query gene, GmaAffx.93046.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	1620801_at	At5g62520	hypothetical protein LOC100245496	-	1e+0	At4g09153	LCR36 (Low-molecular-weight cysteine-rich 36)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1618776_x_at	At5g62520	-	-	1e+0	At2g03930	-	O.I.	H.G.	S.X.	Please select
0.61	83.2	1612754_at	At5g62520	-	-	4e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1619762_at	At5g62520	hypothetical protein LOC100248323	-	4e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609379_at	At5g62520	-	-	4e+0	At5g35550	TT2 (TRANSPARENT TESTA 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1611804_at	At5g62520	hypothetical protein LOC100252436	-	1e-1	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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