Co-expression analysis

Gene ID GmaAffx.93046.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62520: SRO5 (SIMILAR TO RCD ONE 5) (HF=3e-1)
Module size 6 genes
NF 0.56
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.30.95GmaAffx.93046.1.S1_atCF808771--3e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.7790.30.94GmaAffx.36250.1.S1_s_atBG551078--2e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.4463.30.96GmaAffx.78968.2.S1_atBM188587--9e-13At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4057.10.96GmaAffx.59154.1.S1_atBG508624--7e+0At4g37685unknown proteinO.I.H.G.S.X.
0.3650.80.96GmaAffx.87526.1.S1_atBM954581--6e+0At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.
0.2939.00.95Gma.3639.1.S1_atAB083030.1syringolide-induced protein B15-3-5-1e-4At2g38600acid phosphatase class B family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.5GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.095.6GSM29248784_1251.1G.R158L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HU08A18u_at, orthologous to the query gene, GmaAffx.93046.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8293.1HU08A18u_atAt5g62520--4e+0At5g46560unknown proteinO.I.H.G.S.X.
0.2224.2HW09E23u_atAt5g62520--4e+0At2g20690lumazine-binding family proteinO.I.H.G.S.X.
0.2224.2Contig10603_atAt5g62520--4e+0At5g66170-O.I.H.G.S.X.
0.2122.6Contig17529_atAt5g62520--3e-2At1g72125transporterO.I.H.G.S.X.
0.2122.6Contig11931_atAt5g62520--1e+0At5g21910unknown proteinO.I.H.G.S.X.
0.1514.1Contig19410_atAt5g62520--1e+1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.
0.119.4Contig8964_atAt5g62520--2e-2At1g04778unknown proteinO.I.H.G.S.X.
0.119.4Contig18530_s_atAt5g62520--5e+0At5g46620unknown proteinO.I.H.G.S.X.
0.119.4Contig25424_atAt5g62520--5e+0At5g64750ABR1 (ABA REPRESSOR1)O.I.H.G.S.X.
0.097.4Contig8593_s_atAt5g62520--2e+0At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.097.4Contig8835_atAt5g62520--1e-7At5g52200unknown proteinO.I.H.G.S.X.
0.097.4Contig7287_atAt5g62520--6e-5At2g24850TAT3 (TYROSINE AMINOTRANSFERASE 3)O.I.H.G.S.X.
0.086.5Contig4710_atAt5g62520--3e-1At2g17560HMGB4 (HIGH MOBILITY GROUP B 4)O.I.H.G.S.X.
0.086.5Contig4707_x_atAt5g62520--5e+0At2g35900unknown proteinO.I.H.G.S.X.
0.075.8HU14O09u_atAt5g62520--5e+0At1g35320unknown proteinO.I.H.G.S.X.
0.075.8Contig4156_s_atAt5g62520--2e-39At1g10730clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.075.8Contig3569_atAt5g62520--7e-18At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.054.1rbaal35o19_s_atAt5g62520--4e+0At5g58560phosphatidate cytidylyltransferase family proteinO.I.H.G.S.X.
0.054.1Contig7324_s_atAt5g62520--1e-36At4g26570ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)O.I.H.G.S.X.
0.032.6Contig21112_atAt5g62520--6e+0At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.021.8Contig8615_atAt5g62520--2e+0At5g24870zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage