Co-expression analysis

Gene ID	GmaAffx.92974.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g17780: unknown protein (HF=8e-2)
Module size	7 genes
NF	0.57
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the maize gene, Zm.8003.1.A1_at, orthologous to the query gene, GmaAffx.92974.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	Zm.8003.1.A1_at	At3g17780	hypothetical protein LOC100191929	-	5e-1	At3g03630	CS26	O.I.	H.G.	S.X.	Please select
0.69	86.5	Zm.18877.1.A1_at	At3g17780	protein phosphatase 2C	-	3e-1	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.19174.1.A1_at	At3g17780	NAD(P)H-dependent oxidoreductase	-	5e+0	At4g00920	COP1-interacting protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.5850.1.A1_at	At3g17780	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.3531.1.A1_at	At3g17780	p5cs	-	5e-12	At3g55610	P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.4350.1.A1_at	At3g17780	-	-	1e+0	At5g49334	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.14463.1.A1_at	At3g17780	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.5771.1.A1_at	At3g17780	tobamovirus multiplication 3	-	5e-25	At1g14530	THH1 (TOM THREE HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.13325.1.S1_at	At3g17780	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.1402.1.S1_at	At3g17780	-	-	4e+0	At1g29040	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.6567.1.A1_at	At3g17780	-	-	2e+0	At5g41030	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage