Co-expression analysis

Gene ID	GmaAffx.92974.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g17780: unknown protein (HF=8e-2)
Module size	7 genes
NF	0.57
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the grape gene, 1621085_at, orthologous to the query gene, GmaAffx.92974.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621085_at	At3g17780	hypothetical protein LOC100259425	-	4e-1	At1g48440	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1608130_at	At3g17780	hypothetical protein LOC100248764	-	2e-4	At3g57030	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1619491_s_at	At3g17780	hypothetical protein LOC100253896	-	2e-125	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611806_at	At3g17780	hypothetical protein LOC100250197	-	2e+0	At2g27030	CAM5 (CALMODULIN 5)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615739_s_at	At3g17780	hypothetical protein LOC100259425	-	4e+0	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	1617770_at	At3g17780	hypothetical protein LOC100265678	-	1e-72	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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