Co-expression analysis

Gene ID	GmaAffx.92974.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g17780: unknown protein (HF=8e-2)
Module size	7 genes
NF	0.57
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112993.1.S1_at, orthologous to the query gene, GmaAffx.92974.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.112993.1.S1_at	At3g17780	-	-	6e-1	At3g55820	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.9990.3.S1_x_at	At3g17780	-	-	1e-3	At1g22880	CEL5 (CELLULASE 5)	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.105981.1.S1_at	At3g17780	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.55497.1.S1_at	At3g17780	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.23108.3.S1_x_at	At3g17780	-	-	4e+0	At5g26870	AGL26	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.24230.1.S1_at	At3g17780	-	-	3e+0	At5g27690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage