Co-expression analysis

Gene ID GmaAffx.92974.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At3g17780: unknown protein (HF=8e-2)
Module size 7 genes
NF 0.57
%ile 87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.10.98GmaAffx.92974.1.S1_s_atCF808699--8e-2At3g17780unknown proteinO.I.H.G.S.X.
0.8392.50.98Gma.732.1.A1_atAW309355--4e-7At4g07390PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.6382.90.99Gma.4035.1.S1_atBQ453456--1e-38At5g11560catalyticO.I.H.G.S.X.
0.6181.80.98Gma.8460.1.S1_atAF404404.1acyl-CoA oxidase-7e-39At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.4867.70.99Gma.448.2.S1_a_atBM091754--3e-21At3g60820PBF1O.I.H.G.S.X.
0.4463.30.98Gma.5368.1.S1_atBQ627877--2e-30At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.3650.80.99Gma.17344.1.S1_atCD409198--7e-41At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.095.6GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0240700, orthologous to the query gene, GmaAffx.92974.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5676.3Os03g0240700At3g17780-Conserved hypothetical protein7e-3At3g17780unknown proteinO.I.H.G.S.X.
0.5371.3Os04g0165300At3g17780-Conserved hypothetical protein5e-2At2g45980unknown proteinO.I.H.G.S.X.
0.1712.6Os03g0669600At3g17780-Hypothetical protein7e+0At5g06410DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.138.2Os07g0608300At3g17780-Esterase/lipase/thioesterase domain containingprotein1e-2At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.094.9Os02g0800100At3g17780-Proteasome maturation factor UMP1 family protein2e-2At5g57370unknown proteinO.I.H.G.S.X.
0.052.5Os09g0297100At3g17780-Ubiquitin-conjugating enzyme spm2(Ubiquitin-conjugating enzyme variant MMS2 homolog) (UEVMMS2)4e-35At2g36060ubiquitin-conjugating enzyme family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage