CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.92974.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At3g17780: unknown protein (HF=8e-2)

Module size 7 genes

NF 0.57

%ile 87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 0.98 GmaAffx.92974.1.S1_s_at CF808699 - - 8e-2 At3g17780 unknown protein O.I. H.G. S.X.
0.83 92.5 0.98 Gma.732.1.A1_at AW309355 - - 4e-7 At4g07390 PQ-loop repeat family protein / transmembrane family protein O.I. H.G. S.X.
0.63 82.9 0.99 Gma.4035.1.S1_at BQ453456 - - 1e-38 At5g11560 catalytic O.I. H.G. S.X.
0.61 81.8 0.98 Gma.8460.1.S1_at AF404404.1 acyl-CoA oxidase - 7e-39 At4g16760 ACX1 (ACYL-COA OXIDASE 1) O.I. H.G. S.X.
0.48 67.7 0.99 Gma.448.2.S1_a_at BM091754 - - 3e-21 At3g60820 PBF1 O.I. H.G. S.X.
0.44 63.3 0.98 Gma.5368.1.S1_at BQ627877 - - 2e-30 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.36 50.8 0.99 Gma.17344.1.S1_at CD409198 - - 7e-41 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 95.6 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g17780, orthologous to the query gene, GmaAffx.92974.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.43 55.3 At3g17780 821046 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.44 57.2 At4g22930 828392 PYR4 (PYRIMIDIN 4) Encodes dihydroorotase (PYR4). O.I. H.G. S.X.
0.43 55.3 At1g09780 837507 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative F:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAM O.I. H.G. S.X.
0.29 30.3 At5g03300 831882 ADK2 (ADENOSINE KINASE 2) Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion. O.I. H.G. S.X.
0.11 4.1 At2g37250 818302 ADK (ADENOSINE KINASE) encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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