Co-expression analysis

Gene ID	GmaAffx.92973.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g22950: ATARFC1 (ADP-ribosylation factor C1) (HF=2e+0)
Module size	9 genes
NF	0.19
%ile	41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	78.8	0.95	GmaAffx.92973.1.S1_s_at	CF808698	-	-	2e+0	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	Gma.7482.1.S1_at	BI967568	-	-	1e+0	At2g39430	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	Gma.3650.2.S1_s_at	BF596986	-	-	2e+0	At5g43066	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	GmaAffx.92609.1.S1_at	CF808334	acyl-CoA oxidase	-	2e-58	At3g51840	ACX4 (ACYL-COA OXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.96	GmaAffx.90642.1.S1_s_at	CF809113	-	-	3e-17	At1g80920	J8	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.2313.2.S1_s_at	BI700522	hypothetical LOC547601	-	2e-35	At4g27450	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.96	GmaAffx.80785.2.S1_at	AW780532	-	-	3e-39	At4g34030	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.97	Gma.1444.4.S1_a_at	AI461215	-	-	2e-1	At2g22800	HAT9	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	Gma.1444.1.S1_at	AW350114	-	-	1e-5	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.5	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.9	98.0	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6	97.7	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.6	97.7	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209586	susceptible_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3	96.2	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209574	resistant_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM209588	susceptible_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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