Co-expression analysis

Gene ID	GmaAffx.92861.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g20693: HMGB2 (HIGH MOBILITY GROUP B 2) (HF=8e-2)
Module size	6 genes
NF	0.47
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.98	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6732.1.S1_s_at, orthologous to the query gene, GmaAffx.92861.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.6732.1.S1_s_at	At1g20693	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	ZmAffx.401.1.S1_at	At1g20693	-	-	2e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.9627.1.A1_at	At1g20693	-	-	1e+0	At4g21830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.3664.1.S1_at	At1g20693	hypothetical protein LOC100192489	-	1e-15	At5g45430	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.8970.1.A1_at	At1g20693	hypothetical protein LOC100193936	-	5e-1	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.4242.1.S1_at	At1g20693	-	-	9e-2	At3g57240	BG3 (BETA-1,3-GLUCANASE 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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