Co-expression analysis

Gene ID	GmaAffx.92861.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g20693: HMGB2 (HIGH MOBILITY GROUP B 2) (HF=8e-2)
Module size	6 genes
NF	0.47
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.98	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1612752_at, orthologous to the query gene, GmaAffx.92861.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	1612752_at	At1g20693	-	-	3e-20	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.	Please select
0.49	69.3	1617562_at	At1g20693	hypothetical protein LOC100246010	-	5e-60	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select
0.48	68.8	1620214_at	At1g20693	hypothetical protein LOC100252624	-	1e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1620582_s_at	At1g20693	hypothetical protein LOC100267325	-	2e+0	At4g26310	elongation factor P (EF-P) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1612618_at	At1g20693	-	-	3e-7	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1619511_at	At1g20693	small basic intrinsic protein 1	-	2e-4	At5g18290	SIP1	O.I.	H.G.	S.X.	Please select
0.43	61.5	1610276_s_at	At1g20693	hypothetical protein LOC100244121	-	7e-6	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	1618783_at	At1g20693	hypothetical protein LOC100241424	-	2e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610899_at	At1g20693	hypothetical protein LOC100265829	-	6e-34	At3g20390	endoribonuclease L-PSP family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1609280_at	At1g20693	hypothetical protein LOC100258286	-	3e-7	At3g01920	yrdC family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620535_at	At1g20693	hypothetical protein LOC100261174	-	5e-29	At2g31810	acetolactate synthase small subunit, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	1618507_at	At1g20693	hypothetical protein LOC100247746	-	4e-3	At4g16695	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1614210_at	At1g20693	hypothetical protein LOC100250962	-	2e-11	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.38	53.6	1616609_at	At1g20693	hypothetical protein LOC100247612	-	4e-7	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	1617530_s_at	At1g20693	hypothetical protein LOC100258272	-	3e-4	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1606714_at	At1g20693	hypothetical protein LOC100257803	-	4e+0	At4g08640	ATP binding / protein binding	O.I.	H.G.	S.X.	Please select
0.32	43.1	1606652_at	At1g20693	hypothetical protein LOC100249126	-	4e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1615480_at	At1g20693	hypothetical protein LOC100247007	-	2e-6	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619382_at	At1g20693	hypothetical protein LOC100251065	-	2e-27	At1g48240	ATNPSN12	O.I.	H.G.	S.X.	Please select
0.31	41.3	1622091_at	At1g20693	hypothetical protein LOC100242189	-	4e+0	At2g01360	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	1620441_s_at	At1g20693	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	3e-85	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.30	39.4	1609032_at	At1g20693	hypothetical protein LOC100257935	-	3e+0	At4g14520	DNA-directed RNA polymerase II-related	O.I.	H.G.	S.X.	Please select
0.28	37.7	1614329_s_at	At1g20693	hypothetical protein LOC100264072	-	2e+0	At5g25640	-	O.I.	H.G.	S.X.	Please select
0.28	37.7	1617016_at	At1g20693	hypothetical protein LOC100261969	-	3e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	1609462_at	At1g20693	hypothetical protein LOC100256184	-	7e-5	At1g70570	anthranilate phosphoribosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614924_at	At1g20693	-	-	1e-20	At4g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616236_at	At1g20693	hypothetical protein LOC100260831	-	2e-22	At1g43900	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	1621023_at	At1g20693	hypothetical protein LOC100258618	-	8e-27	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1608505_s_at	At1g20693	hypothetical protein LOC100241945	-	4e-4	At3g08610	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610954_at	At1g20693	hypothetical protein LOC100266621	-	3e-1	At1g47330	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	1616782_s_at	At1g20693	hypothetical protein LOC100251751	-	3e-8	At5g49540	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1614356_at	At1g20693	-	-	6e-1	At1g07880	ATMPK13	O.I.	H.G.	S.X.	Please select
0.23	27.5	1621845_s_at	At1g20693	hypothetical protein LOC100261121	-	1e-13	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612412_at	At1g20693	hypothetical protein LOC100259477	-	5e-104	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	1618747_at	At1g20693	hypothetical protein LOC100261543	-	7e-8	At1g16460	ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1609368_s_at	At1g20693	hypothetical protein LOC100246319	-	3e-1	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1610844_at	At1g20693	hypothetical LOC100257700	-	5e-18	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1615989_at	At1g20693	hypothetical protein LOC100255339	-	2e-21	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612051_at	At1g20693	hypothetical protein LOC100256212	-	2e-27	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1620246_at	At1g20693	hypothetical protein LOC100241159	-	3e-17	At1g19800	TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1614753_at	At1g20693	hypothetical protein LOC100241307	-	2e-4	At2g43090	aconitase C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1621699_at	At1g20693	hypothetical protein LOC100248753	-	2e-35	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1612896_at	At1g20693	hypothetical protein LOC100264259	-	1e+0	At5g42470	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	1607171_at	At1g20693	-	-	4e+0	At5g46850	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	1613385_s_at	At1g20693	hypothetical protein LOC100253611	-	2e-62	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1606915_at	At1g20693	hypothetical protein LOC100267395	-	9e-8	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.15	15.6	1620947_at	At1g20693	hypothetical protein LOC100257258	-	8e-47	At5g53850	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1609751_at	At1g20693	hypothetical protein LOC100253636	-	5e-51	At5g18520	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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