Co-expression analysis

Gene ID	GmaAffx.92861.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g20693: HMGB2 (HIGH MOBILITY GROUP B 2) (HF=8e-2)
Module size	6 genes
NF	0.47
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.98	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.13687.1.S1_at, orthologous to the query gene, GmaAffx.92861.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.13687.1.S1_at	At1g20693	high mobility group family	-	4e-8	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.2019.1.S1_at	At1g20693	hypothetical protein	-	2e-14	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.7403.1.A1_at	At1g20693	hypothetical protein	-	1e-1	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.47701.1.S1_at	At1g20693	hypothetical protein	-	5e-3	At5g45170	CbbY protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.110312.1.S1_at	At1g20693	hypothetical protein	-	1e-26	At5g61670	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.24503.1.S1_s_at	At1g20693	hypothetical protein	-	9e-18	At3g06980	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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