CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.92861.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At1g20693: HMGB2 (HIGH MOBILITY GROUP B 2) (HF=8e-2)

Module size 6 genes

NF 0.47

%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 71.7 0.98 GmaAffx.92861.1.S1_s_at CF808586 - - 8e-2 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) O.I. H.G. S.X.
0.63 82.9 0.98 GmaAffx.24666.1.S1_at CA783210 - - 2e-1 At2g39705 RTFL8 (ROTUNDIFOLIA LIKE 8) O.I. H.G. S.X.
0.46 65.5 0.98 Gma.11341.3.S1_s_at BM177332 - - 8e-26 At4g17900 zinc-binding family protein O.I. H.G. S.X.
0.42 59.3 0.98 PsAffx.psHA006iH10r_s_at PsAffx.psHA006iH10r - - 1e+0 At2g28140 unknown protein O.I. H.G. S.X.
0.33 46.1 0.98 GmaAffx.58176.1.S1_at BU577254 - - 3e-1 At2g39540 gibberellin-regulated family protein O.I. H.G. S.X.
0.32 43.7 0.98 GmaAffx.65140.1.S1_at BI700031 - - 7e-2 At4g33670 L-galactose dehydrogenase (L-GalDH) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os09g0551600, orthologous to the query gene, GmaAffx.92861.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 Os09g0551600 At1g20693 - HMGd1 protein (Nucleasome/chromatin assemblyfactor D protein NFD101) 1e-1 Atmg00840 - O.I. H.G. S.X.
0.39 48.3 Os03g0841800 At1g20693 - Shaggy-related protein kinase kappa (EC 2.7.1.-)(ASK-kappa) (AtK-1) 4e-74 At1g57870 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) O.I. H.G. S.X.
0.37 45.0 Os07g0259700 At1g20693 - PRLI-interacting factor G (Fragment) 1e+0 At1g53625 unknown protein O.I. H.G. S.X.
0.27 27.5 Os05g0156600 At1g20693 - Tubulin gamma-1 chain (Gamma-1 tubulin) 4e-154 At3g61650 TUBG1 (GAMMA-TUBULIN) O.I. H.G. S.X.
0.26 25.6 Os02g0831600 At1g20693 - AGO1 homologous protein 2e-21 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.25 24.1 Os01g0718300 At1g20693 - Systemin receptor SR160 precursor (EC 2.7.1.37)(Brassinosteroid LRR receptor kinase) 5e-7 At4g39400 BRI1 (BRASSINOSTEROID INSENSITIVE 1) O.I. H.G. S.X.
0.23 21.2 Os07g0568000 At1g20693 - Conserved hypothetical protein 2e-2 At1g10180 unknown protein O.I. H.G. S.X.
0.21 17.9 Os08g0242900 At1g20693 - Conserved hypothetical protein 9e-7 At5g57410 unknown protein O.I. H.G. S.X.
0.17 12.6 Os01g0251000 At1g20693 - Conserved hypothetical protein 7e-5 At3g06960 PDE320 (PIGMENT DEFECTIVE 320) O.I. H.G. S.X.
0.17 12.6 Os01g0817800 At1g20693 - WD40-like domain containing protein 1e-18 At3g54190 - O.I. H.G. S.X.
0.15 10.3 Os04g0539500 At1g20693 - AtGATA-3 protein (GATA transcription factor 3) 4e-9 At5g66320 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.15 10.3 Os03g0126100 At1g20693 - C-terminal binding protein 3e-46 At1g01510 AN (ANGUSTIFOLIA) O.I. H.G. S.X.
0.14 9.3 Os10g0114500 At1g20693 - Barley B recombinant like-protein B (Barley Brecombinant like-protein A) 8e-4 At1g14685 BPC2 (BASIC PENTACYSTEINE 2) O.I. H.G. S.X.
0.10 5.7 Os02g0553600 At1g20693 - Transcriptional coactivator p15 family protein 3e-1 At5g65220 ribosomal protein L29 family protein O.I. H.G. S.X.
0.10 5.7 Os07g0694500 At1g20693 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-2 At1g02840 SR1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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