CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.92861.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At1g20693: HMGB2 (HIGH MOBILITY GROUP B 2) (HF=8e-2)

Module size 6 genes

NF 0.47

%ile 77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 71.7 0.98 GmaAffx.92861.1.S1_s_at CF808586 - - 8e-2 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) O.I. H.G. S.X.
0.63 82.9 0.98 GmaAffx.24666.1.S1_at CA783210 - - 2e-1 At2g39705 RTFL8 (ROTUNDIFOLIA LIKE 8) O.I. H.G. S.X.
0.46 65.5 0.98 Gma.11341.3.S1_s_at BM177332 - - 8e-26 At4g17900 zinc-binding family protein O.I. H.G. S.X.
0.42 59.3 0.98 PsAffx.psHA006iH10r_s_at PsAffx.psHA006iH10r - - 1e+0 At2g28140 unknown protein O.I. H.G. S.X.
0.33 46.1 0.98 GmaAffx.58176.1.S1_at BU577254 - - 3e-1 At2g39540 gibberellin-regulated family protein O.I. H.G. S.X.
0.32 43.7 0.98 GmaAffx.65140.1.S1_at BI700031 - - 7e-2 At4g33670 L-galactose dehydrogenase (L-GalDH) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g20693, orthologous to the query gene, GmaAffx.92861.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g20693 838658 HMGB2 (HIGH MOBILITY GROUP B 2) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. O.I. H.G. S.X.
0.60 75.7 At3g17020 820958 universal stress protein (USP) family protein F:molecular_function unknown;P:response to cold, response to stress;C:plasma membrane;BPAFOM O.I. H.G. S.X.
0.31 33.8 At3g46000 823743 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) Encodes depolymerizing factor 2. O.I. H.G. S.X.
0.30 32.1 At1g20696 838659 HMGB3 (HIGH MOBILITY GROUP B 3) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. O.I. H.G. S.X.
0.20 14.4 At1g01820 839257 PEX11C (PEROXIN 11C) member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. O.I. H.G. S.X.
0.17 10.2 At5g10860 830953 CBS domain-containing protein F:unknown;P:response to salt stress;C:mitochondrion;BOAPFM O.I. H.G. S.X.
0.16 8.8 At4g14710 827122 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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