Co-expression analysis

Gene ID	GmaAffx.92802.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g75440: UBC16 (ubiquitin-conjugating enzyme 16) (HF=8e-33)
Module size	6 genes
NF	0.55
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	GmaAffx.92802.1.S1_s_at	CF806550	-	-	8e-33	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.6207.1.S1_s_at	CF922738	-	-	7e-16	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.99	Gma.17436.1.S1_at	CD397773	-	-	4e-23	At4g36450	ATMPK14 (Mitogen-activated protein kinase 14)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	GmaAffx.8999.1.S1_at	CD403960	-	-	1e-32	At5g25760	PEX4 (PEROXIN4)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.99	GmaAffx.90193.1.S1_s_at	CF805918	-	-	8e-21	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.99	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8033.1.S1_at, orthologous to the query gene, GmaAffx.92802.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	Zm.8033.1.S1_at	At1g75440	ubiquitin-conjugating enzyme E2 W	-	1e-26	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.13619.1.A1_at	At1g75440	hypothetical protein LOC100192497 /// serine/threonine-protein kinase SAPK2 /// serine/threonine-protein kinase SAPK2	-	1e-30	At4g33950	OST1 (OPEN STOMATA 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.9749.1.S1_a_at	At1g75440	-	-	3e+0	At1g02850	BGLU11 (BETA GLUCOSIDASE 11)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.7276.1.S1_at	At1g75440	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.4283.2.A1_at	At1g75440	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.335.1.S1_a_at	At1g75440	Zea mays MADS16	-	3e-2	At3g57390	AGL18	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.4182.1.S1_at	At1g75440	hypothetical protein LOC100276027	-	1e-4	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.14115.1.A1_at	At1g75440	hypothetical protein LOC100278990	-	2e+0	At5g19750	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.12634.4.S1_a_at	At1g75440	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage