Co-expression analysis

Gene ID	GmaAffx.92678.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g34850: MEE25 (maternal effect embryo arrest 25) (HF=6e-35)
Module size	7 genes
NF	0.51
%ile	81.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.98	GmaAffx.92678.1.S1_s_at	CF808403	-	-	6e-35	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.4068.1.S1_at	CD399501	-	-	7e-26	At3g60800	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293459	47_1596.1R.R009P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.9488.1.A1_at, orthologous to the query gene, GmaAffx.92678.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	Zm.9488.1.A1_at	At2g34850	UDP-arabinose 4-epimerase 2	-	4e-14	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.5222.1.A1_a_at	At2g34850	hypothetical protein LOC100192843	-	1e-55	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.800.1.S1_at	At2g34850	phosphoenolpyruvate carboxylase	-	8e-55	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.10628.1.A1_at	At2g34850	-	-	7e-2	At2g04780	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.356.1.S1_at	At2g34850	hypothetical protein AY104017 /// ubiquitin conjugating enzyme	-	2e-18	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.8788.1.A1_at	At2g34850	hypothetical protein LOC100276785	-	1e+0	At5g41570	WRKY24	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.11950.1.A1_at	At2g34850	-	-	2e-6	At3g19700	IKU2 (HAIKU2)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.10728.1.A1_at	At2g34850	-	-	4e+0	At2g10557	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.877.1.A1_at	At2g34850	hypothetical protein LOC100276059	-	8e+0	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.5787.2.A1_at	At2g34850	-	-	4e-1	At5g48790	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.6743.3.S1_at	At2g34850	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.4628.1.A1_at	At2g34850	hypothetical protein LOC100272450	-	2e-2	At4g33400	dem protein-related / defective embryo and meristems protein-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.11951.1.A1_at	At2g34850	-	-	4e+0	At3g56090	ATFER3 (ferritin 3)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.7872.1.S1_at	At2g34850	TBC1 domain family member 22A	-	2e-9	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.14916.4.S1_a_at	At2g34850	hypothetical protein LOC100193596 /// ubiquitin-conjugating enzyme E2-21 kDa 1	-	1e-20	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.16740.1.S1_at	At2g34850	-	-	6e-3	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.3477.1.A1_at	At2g34850	-	-	2e+0	At4g30670	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.11843.1.A1_at	At2g34850	-	-	1e+0	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.2601.1.S1_at	At2g34850	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.875.1.A1_at	At2g34850	-	-	4e-4	At3g14860	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.6692.2.A1_at	At2g34850	-	-	5e-14	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.5851.14.S1_at	At2g34850	-	-	9e-2	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.2434.1.S1_at	At2g34850	TIL-2 - Zea mays Temperature-induced lipocalin-2	-	5e-13	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.6721.12.A1_s_at	At2g34850	Histone H4	-	6e-18	At1g07660	histone H4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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