Co-expression analysis

Gene ID	GmaAffx.92678.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g34850: MEE25 (maternal effect embryo arrest 25) (HF=6e-35)
Module size	7 genes
NF	0.51
%ile	81.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	80.7	0.98	GmaAffx.92678.1.S1_s_at	CF808403	-	-	6e-35	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.4068.1.S1_at	CD399501	-	-	7e-26	At3g60800	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293459	47_1596.1R.R009P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig10276_at, orthologous to the query gene, GmaAffx.92678.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig10276_at	At2g34850	-	-	8e-44	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig10278_at	At2g34850	-	-	3e+0	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig11518_at	At2g34850	-	-	5e-9	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig2924_s_at	At2g34850	-	-	9e-1	At5g16550	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig9088_at	At2g34850	-	-	1e+0	At5g46190	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig14349_at	At2g34850	-	-	1e+1	Atmg00010	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig5112_at	At2g34850	-	-	6e-45	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig10957_at	At2g34850	-	-	7e+0	At5g10070	RNase L inhibitor protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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