Co-expression analysis

Gene ID	GmaAffx.92625.1.S1_s_at
Gene name	NAC domain protein
Homology with Arabidopsis	Similar to At1g01720: ATAF1 (HF=8e-42)
Module size	19 genes
NF	0.53
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	0.94	GmaAffx.92625.1.S1_s_at	CF807343	NAC domain protein	-	8e-42	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.97	Gma.15311.1.S1_at	BE821873	-	-	2e-3	At3g06850	BCE2	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.94	Gma.12012.1.S1_s_at	BU548282	-	-	1e-14	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.95	Gma.17989.1.S1_s_at	AW733689	-	-	3e+0	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.96	GmaAffx.2613.1.S1_at	BM499230	-	-	5e-23	At5g04040	SDP1 (SUGAR-DEPENDENT1)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.96	Gma.17989.2.S1_s_at	BM953789	-	-	5e+0	At5g53940	yippee family protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	Gma.13167.1.S1_at	AJ563366.1	monosaccharide transporter	-	2e-4	At1g77210	sugar transporter, putative	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	Gma.5701.2.S1_at	BI701059	-	-	1e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	Gma.17592.1.S1_at	BE658279	Peroxisomal citrate synthase precursor	-	3e-45	At2g42790	CSY3 (citrate synthase 3)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.96	Gma.5701.1.S1_at	BM307614	-	-	9e-13	At2g24100	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.95	Gma.7662.2.S1_at	CD402660	-	-	6e-9	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	Gma.15311.2.S1_a_at	BM520868	-	-	5e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	Gma.7662.1.S1_a_at	BU548363	-	-	4e-5	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.95	Gma.3429.1.S1_at	BI974673	-	-	1e-12	At1g21400	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.23763.1.S1_at	BU579160	-	-	8e-47	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.95	Gma.16423.1.S1_at	BG507821	-	-	2e-93	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.96	GmaAffx.74229.1.S1_at	AW348139	-	-	4e-1	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.96	Gma.3065.1.S1_s_at	AW349564	-	-	1e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	Gma.16342.1.S1_at	BI968678	-	-	4e-7	At3g01650	RGLG1 (RING domain Ligase1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.3	GSM293197	79_C053.1O.R9O3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM292292	39_C075.1E.R9E1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292730	75_C165.1J.R9J1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292164	19_C009.1A.R9A2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292274	19_C089.1E.R9E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.5	97.7	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.4	97.6	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294007	5_3095.2F.R9F1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2	97.4	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.0	97.2	GSM292240	49_C033.1B.R9B3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292793	53_C197.1K.R9K3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293706	42_3053.2C.R9C3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294112	68_3117.2G.R9G2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8	97.0	GSM292542	55_C135.1H.R9H2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292522	37_C129.1H.R9H1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293763	9_3039.2C.R9C1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293938	84_3083.2E.R9E2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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