Co-expression analysis

Gene ID	GmaAffx.92535.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g26970: protein kinase, putative (HF=6e-2)
Module size	6 genes
NF	0.03
%ile	13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.88	GmaAffx.92535.1.S1_at	CF808260	-	-	6e-2	At1g26970	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.96	GmaAffx.41708.1.S1_s_at	BG046159	-	-	5e-2	At1g12810	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.97	Gma.12800.2.S1_at	BE057137	-	-	8e+0	At5g51030	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	Gma.2338.3.S1_at	BI426604	-	-	3e-48	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	Gma.4125.1.S1_at	BM567768	-	-	9e-37	At3g58580	hydrolase	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	Gma.3967.1.S1_at	AW348931	-	-	3e-6	At3g01340	protein transport protein SEC13 family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.8	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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