Co-expression analysis

Gene ID	GmaAffx.92473.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g01360: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.52
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	GmaAffx.92473.1.S1_s_at	CF809138	-	-	1e+0	At3g01360	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.99	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.99	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.3735.3.S1_s_at	BU764012	-	-	1e-67	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.99	GmaAffx.34491.1.S1_at	BE820865	-	-	9e-13	At1g16360	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, Ta.16364.1.S1_at, orthologous to the query gene, GmaAffx.92473.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	Ta.16364.1.S1_at	At3g01360	-	-	7e-2	At5g01350	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.112439.1.S1_x_at	At3g01360	-	-	1e+0	At4g27310	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.85589.1.S1_at	At3g01360	-	-	4e+0	At2g23430	ICK1	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6838.1.S1_at	At3g01360	-	-	1e-9	At1g72420	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.112314.1.S1_at	At3g01360	-	-	1e+0	At3g21680	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.106823.1.S1_x_at	At3g01360	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.70602.1.S1_at	At3g01360	-	-	3e+0	At5g53530	VPS26A (VACUOLAR PROTEIN SORTING 26A)	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.25411.1.S1_at	At3g01360	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9120.2.S1_at	At3g01360	-	-	5e+0	At5g57080	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3083.2.A1_at	At3g01360	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.118823.1.A1_at	At3g01360	-	-	2e+0	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.20393.1.S1_x_at	At3g01360	-	-	3e-1	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.26385.1.A1_at	At3g01360	-	-	2e-15	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.106823.1.S1_at	At3g01360	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.16574.1.S1_at	At3g01360	-	-	4e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.9334.1.S1_at	At3g01360	-	-	1e+0	At3g43630	nodulin, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.30664.1.S1_at	At3g01360	-	-	1e+0	At1g03510	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.82838.1.S1_at	At3g01360	-	-	3e+0	At2g27330	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.30610.1.S1_at	At3g01360	-	-	1e+1	At5g60890	MYB34 (MYB DOMAIN PROTEIN 34)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.2138.2.S1_at	At3g01360	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.38268.1.A1_at	At3g01360	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.58161.1.S1_at	At3g01360	-	-	3e+0	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.26898.1.A1_at	At3g01360	-	-	7e-31	At2g18450	SDH1-2	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.26942.1.S1_at	At3g01360	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.19361.2.S1_at	At3g01360	-	-	5e-15	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.5807.2.S1_at	At3g01360	-	-	3e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.77776.1.S1_at	At3g01360	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.13009.1.S1_at	At3g01360	-	-	5e+0	At5g43620	S-locus protein-related	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.30628.1.S1_at	At3g01360	-	-	1e-3	At2g35960	NHL12	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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