CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.92473.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At3g01360: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.52

%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.99 GmaAffx.92473.1.S1_s_at CF809138 - - 1e+0 At3g01360 unknown protein O.I. H.G. S.X.
0.60 80.7 0.99 GmaAffx.22482.1.S1_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) O.I. H.G. S.X.
0.53 74.2 0.98 Gma.10261.1.S1_at BG839311 - - 2e-52 At3g27090 - O.I. H.G. S.X.
0.53 74.2 0.99 GmaAffx.22482.1.S1_x_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) O.I. H.G. S.X.
0.33 46.1 0.98 Gma.3735.3.S1_s_at BU764012 - - 1e-67 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) O.I. H.G. S.X.
0.20 25.1 0.99 GmaAffx.34491.1.S1_at BE820865 - - 9e-13 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 95.6 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g01360, orthologous to the query gene, GmaAffx.92473.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.33 38.1 At3g01360 821158 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PO O.I. H.G. S.X.
0.67 81.6 At5g06660 830554 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOP O.I. H.G. S.X.
0.40 50.8 At5g11280 830998 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.36 43.6 At1g20050 838593 HYD1 (HYDRA1) C-8 sterol isomerase O.I. H.G. S.X.
0.29 30.3 At3g25540 822140 LAG1 LAG1 homolog 1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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