Co-expression analysis

Gene ID	GmaAffx.92292.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g19090: RNA-binding protein, putative (HF=6e-2)
Module size	8 genes
NF	0.56
%ile	86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	74.8	0.94	GmaAffx.92292.1.S1_at	CF808017	-	-	6e-2	At3g19090	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.95	GmaAffx.93465.1.S1_at	CF809190	-	-	3e-1	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	GmaAffx.92911.1.S1_at	CF808636	Transcription factor TFIIB	-	7e-45	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	GmaAffx.93597.1.S1_at	CF809322	-	-	5e+0	At4g37235	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.94	GmaAffx.89491.1.A1_at	CK606189	-	-	1e+0	At2g25355	exonuclease-related	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.95	GmaAffx.93546.1.S1_at	CF806160	-	-	4e-13	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.95	GmaAffx.92207.1.S1_at	CF807924	-	-	6e-24	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.95	GmaAffx.89071.1.A1_at	CK605653	-	-	2e-36	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM292207	7-1011.1A.R007U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.2	96.0	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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