CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.92278.1.S1_s_at

Gene name 6-phosphogluconate dehydrogenase
Homology with Arabidopsis Similar to At3g02360: 6-phosphogluconate dehydrogenase family protein (HF=4e-74)

Module size 8 genes

NF 0.73

%ile 96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.41 58.1 0.97 GmaAffx.92278.1.S1_s_at CF808003 6-phosphogluconate dehydrogenase - 4e-74 At3g02360 6-phosphogluconate dehydrogenase family protein O.I. H.G. S.X.
0.88 93.4 0.97 Gma.15492.1.S1_s_at AF276302.1 chalcone isomerase - 2e+0 At1g52510 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.86 93.0 0.98 Gma.4300.1.S1_s_at S46989.1 chalcone synthase - 5e-29 At5g13930 TT4 (TRANSPARENT TESTA 4) O.I. H.G. S.X.
0.86 93.0 0.98 Gma.4300.3.S1_s_at AI443042 chalcone synthase - 1e-5 At5g13930 TT4 (TRANSPARENT TESTA 4) O.I. H.G. S.X.
0.80 91.5 0.98 GmaAffx.37677.1.S1_s_at BE022626 HIDH mRNA for 2-hydroxyisoflavanone dehydratase - 3e-1 At2g30050 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.78 90.6 0.98 Gma.4300.3.S1_x_at AI443042 chalcone synthase - 1e-5 At5g13930 TT4 (TRANSPARENT TESTA 4) O.I. H.G. S.X.
0.67 86.1 0.97 GmaAffx.92722.1.S1_at CF807561 2-hydroxyisoflavanone dehydratase - 6e-1 At2g30050 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.63 82.9 0.97 GmaAffx.91944.1.S1_s_at CF808330 NAD(P)H dependent 6'-deoxychalcone synthase - 4e-2 At4g37690 galactosyl transferase GMA12/MNN10 family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 95.8 GSM293553 67_3017.2A.R9A3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g02360, orthologous to the query gene, GmaAffx.92278.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At3g02360 821163 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to salt stress;C:peroxisome;BOMPFAV O.I. H.G. S.X.
0.86 93.1 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF O.I. H.G. S.X.
0.60 75.7 At1g48850 841307 EMB1144 (embryo defective 1144) F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM O.I. H.G. S.X.
0.44 57.2 At4g34050 829551 caffeoyl-CoA 3-O-methyltransferase, putative F:caffeoyl-CoA O-methyltransferase activity;P:coumarin biosynthetic process, response to cadmium ion;C:cytosol;BOPMFA O.I. H.G. S.X.
0.43 55.3 At2g22250 816758 aminotransferase class I and II family protein F:L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast;BOPAMF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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