CoP: Co-expressed Biological Processes

Co-expression analysis

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.41	58.1	0.97	GmaAffx.92278.1.S1_s_at	CF808003	6-phosphogluconate dehydrogenase	-	4e-74	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.
0.88	93.4	0.97	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.86	93.0	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.
0.86	93.0	0.98	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.
0.80	91.5	0.98	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.78	90.6	0.98	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.
0.67	86.1	0.97	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.63	82.9	0.97	GmaAffx.91944.1.S1_s_at	CF808330	NAD(P)H dependent 6'-deoxychalcone synthase	-	4e-2	At4g37690	galactosyl transferase GMA12/MNN10 family protein	O.I.	H.G.	S.X.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Gene ID	GmaAffx.92278.1.S1_s_at
Gene name	6-phosphogluconate dehydrogenase
Homology with Arabidopsis	Similar to At3g02360: 6-phosphogluconate dehydrogenase family protein (HF=4e-74)
Module size	8 genes
NF	0.73
%ile	96.4