Co-expression analysis

Gene ID	GmaAffx.92132.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g04770: RPSAb (40S ribosomal protein SA B) (HF=6e-55)
Module size	17 genes
NF	0.58
%ile	88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	83.8	0.97	GmaAffx.92132.1.S1_s_at	CF807857	-	-	6e-55	At3g04770	RPSAb (40S ribosomal protein SA B)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.98	GmaAffx.89146.1.S1_s_at	CK605578	-	-	3e-56	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.99	GmaAffx.90838.1.S1_s_at	CF806563	-	-	2e-42	At1g08360	60S ribosomal protein L10A (RPL10aA)	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.98	Gma.584.2.S1_x_at	BU547551	-	-	6e-40	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.98	GmaAffx.91512.1.S1_s_at	CF807237	-	-	2e-21	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	Gma.11150.1.S1_x_at	AW317399	-	-	3e-1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.5354.1.S1_at	CD401290	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.98	GmaAffx.93118.1.S1_s_at	CF808079	acidic ribosomal protein P0	-	2e-55	At2g40010	60S acidic ribosomal protein P0 (RPP0A)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.6161.1.S1_at	CD400121	-	-	1e-38	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.98	GmaAffx.92880.1.S1_s_at	CF808605	peroxisomal voltage-dependent anion-selective channel protein	-	4e-10	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.99	Gma.756.1.S1_s_at	AW348863	40S ribosomal S4 protein	-	2e-124	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.5354.1.S1_x_at	CD401290	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.1465.1.S1_s_at	CD416674	ribosomal protein S11	-	2e-15	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	GmaAffx.91220.1.S1_s_at	CF806007	-	-	4e-87	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.4113.1.S1_at	AW351051	-	-	2e-9	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	GmaAffx.93249.1.S1_s_at	CF807720	-	-	5e-35	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.15789.1.S1_s_at	BU548182	-	-	7e-30	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	97.3	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.1	97.3	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.1	97.3	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.9	97.1	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.3	96.2	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.1	95.8	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.1	95.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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