CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.91768.1.S1_s_at

Gene name transcription factor
Homology with Arabidopsis Similar to At2g25000: WRKY60 (HF=1e-6)

Module size 6 genes

NF 0.52

%ile 82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.96 GmaAffx.91768.1.S1_s_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 O.I. H.G. S.X.
0.91 98.6 0.97 Gma.3730.2.S1_a_at BI320846 transcription factor - 9e-15 At1g80840 WRKY40 O.I. H.G. S.X.
0.57 78.8 0.96 Gma.10818.2.S1_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 O.I. H.G. S.X.
0.56 78.2 0.95 GmaAffx.17284.1.A1_s_at BE659740 - - 2e+0 At5g14330 unknown protein O.I. H.G. S.X.
0.55 76.3 0.96 GmaAffx.91768.1.S1_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 O.I. H.G. S.X.
0.16 19.7 0.96 Gma.7226.2.S1_a_at BM887472 mitogen-activated protein kinase 1 - 6e-63 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 97.3 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292458 58_1257.1G.R164U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM292459 59_1282.1G.R179P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292469 68_1280.1G.R178P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292481 79_1257.1G.R164L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1614806_s_at, orthologous to the query gene, GmaAffx.91768.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.9 1614806_s_at At2g25000 hypothetical protein LOC100264507 - 2e-4 At2g25000 WRKY60 O.I. H.G. S.X.
0.70 88.6 1610064_at At2g25000 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 O.I. H.G. S.X.
0.67 87.9 1616557_s_at At2g25000 hypothetical protein LOC100252599 - 3e-2 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.63 84.3 1614461_s_at At2g25000 hypothetical protein LOC100252599 /// hypothetical LOC100254334 - 3e-1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) O.I. H.G. S.X.
0.57 79.8 1609265_at At2g25000 hypothetical protein LOC100255460 - 5e-2 At3g60530 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.57 79.8 1622399_at At2g25000 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 O.I. H.G. S.X.
0.56 79.4 1611285_s_at At2g25000 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 O.I. H.G. S.X.
0.53 75.2 1609171_at At2g25000 hypothetical protein LOC100251782 - 2e-2 At1g07530 SCL14 (SCARECROW-LIKE 14) O.I. H.G. S.X.
0.36 50.7 1611650_at At2g25000 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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