Co-expression analysis

Gene ID	GmaAffx.91768.1.S1_s_at
Gene name	transcription factor
Homology with Arabidopsis	Similar to At2g25000: WRKY60 (HF=1e-6)
Module size	6 genes
NF	0.52
%ile	82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	GmaAffx.91768.1.S1_s_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.3730.2.S1_a_at	BI320846	transcription factor	-	9e-15	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.96	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.95	GmaAffx.17284.1.A1_s_at	BE659740	-	-	2e+0	At5g14330	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.91768.1.S1_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.96	Gma.7226.2.S1_a_at	BM887472	mitogen-activated protein kinase 1	-	6e-63	At3g45640	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	97.3	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292458	58_1257.1G.R164U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292459	59_1282.1G.R179P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292469	68_1280.1G.R178P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292481	79_1257.1G.R164L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.10586.2.S1_at, orthologous to the query gene, GmaAffx.91768.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	PtpAffx.10586.2.S1_at	At2g25000	hypothetical protein	-	3e-28	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.203412.1.S1_at	At2g25000	hypothetical protein	-	8e-4	At1g32510	anac011 (Arabidopsis NAC domain containing protein 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.221953.1.S1_s_at	At2g25000	aquaporin, MIP family, PIP subfamily	-	2e-9	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.200033.1.S1_at	At2g25000	hypothetical protein	-	7e-41	At3g13600	calmodulin-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.8996.1.S1_at	At2g25000	hypothetical protein	-	2e+0	At4g05010	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.10586.1.S1_at	At2g25000	hypothetical protein	-	1e-26	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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