Co-expression analysis

Gene ID	GmaAffx.91768.1.S1_s_at
Gene name	transcription factor
Homology with Arabidopsis	Similar to At2g25000: WRKY60 (HF=1e-6)
Module size	6 genes
NF	0.52
%ile	82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	GmaAffx.91768.1.S1_s_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.97	Gma.3730.2.S1_a_at	BI320846	transcription factor	-	9e-15	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.96	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.95	GmaAffx.17284.1.A1_s_at	BE659740	-	-	2e+0	At5g14330	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.91768.1.S1_at	CF807493	transcription factor	-	1e-6	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.96	Gma.7226.2.S1_a_at	BM887472	mitogen-activated protein kinase 1	-	6e-63	At3g45640	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	97.3	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292458	58_1257.1G.R164U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292459	59_1282.1G.R179P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292469	68_1280.1G.R178P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292481	79_1257.1G.R164L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig13781_at, orthologous to the query gene, GmaAffx.91768.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	Contig13781_at	At2g25000	-	-	6e-6	At1g22330	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig14398_s_at	At2g25000	-	-	4e-3	At5g43780	APS4	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig24881_s_at	At2g25000	-	-	5e-2	At1g75340	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	HVSMEm0004D09r2_at	At2g25000	-	-	3e-1	At2g20500	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig5857_s_at	At2g25000	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig15747_at	At2g25000	-	-	8e-13	At3g21640	TWD1 (TWISTED DWARF 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12827_at	At2g25000	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig8695_at	At2g25000	-	-	3e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	HVSMEa0009I06r2_at	At2g25000	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig12607_at	At2g25000	-	-	4e-17	At3g25990	DNA-binding protein GT-1-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig7061_s_at	At2g25000	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig7152_at	At2g25000	-	-	2e-34	At3g58600	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig10840_at	At2g25000	-	-	4e-6	At5g50780	ATP binding	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig10657_at	At2g25000	-	-	2e+0	At4g33310	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig7815_s_at	At2g25000	-	-	2e-5	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig8629_at	At2g25000	-	-	3e-6	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig13081_at	At2g25000	-	-	9e-2	At3g25573	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig6787_at	At2g25000	-	-	7e-1	At2g36190	AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig12938_at	At2g25000	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig10064_at	At2g25000	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig10614_at	At2g25000	-	-	2e-13	At5g13520	peptidase M1 family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig9290_at	At2g25000	-	-	5e-15	At1g62020	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig4131_at	At2g25000	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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