CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.91768.1.S1_s_at

Gene name transcription factor
Homology with Arabidopsis Similar to At2g25000: WRKY60 (HF=1e-6)

Module size 6 genes

NF 0.52

%ile 82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.96 GmaAffx.91768.1.S1_s_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 O.I. H.G. S.X.
0.91 98.6 0.97 Gma.3730.2.S1_a_at BI320846 transcription factor - 9e-15 At1g80840 WRKY40 O.I. H.G. S.X.
0.57 78.8 0.96 Gma.10818.2.S1_at AW568786 WRKY78 - 8e-23 At1g80840 WRKY40 O.I. H.G. S.X.
0.56 78.2 0.95 GmaAffx.17284.1.A1_s_at BE659740 - - 2e+0 At5g14330 unknown protein O.I. H.G. S.X.
0.55 76.3 0.96 GmaAffx.91768.1.S1_at CF807493 transcription factor - 1e-6 At2g25000 WRKY60 O.I. H.G. S.X.
0.16 19.7 0.96 Gma.7226.2.S1_a_at BM887472 mitogen-activated protein kinase 1 - 6e-63 At3g45640 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 97.3 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292458 58_1257.1G.R164U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM292459 59_1282.1G.R179P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292469 68_1280.1G.R178P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292481 79_1257.1G.R164L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g25000, orthologous to the query gene, GmaAffx.91768.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.25 22.6 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. H.G. S.X.
0.67 81.6 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. O.I. H.G. S.X.
0.17 10.2 At3g26210 822222 CYP71B23 putative cytochrome P450 O.I. H.G. S.X.
0.07 1.9 At1g23840 838995 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.07 1.9 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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