Co-expression analysis

Gene ID	GmaAffx.91578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54190: - (HF=6e-74)
Module size	8 genes
NF	0.11
%ile	30.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	0.97	GmaAffx.91578.1.S1_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.91578.1.S1_x_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	GmaAffx.91578.1.S1_s_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	GmaAffx.75978.2.S1_x_at	AI900126	-	-	8e-1	At3g21420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	GmaAffx.82510.1.S1_at	BG239314	-	-	1e-1	At5g37820	NIP4	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.97	GmaAffx.75978.3.S1_s_at	CA937876	-	-	2e-35	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	Gma.2607.2.S1_at	BF595916	-	-	9e-1	At5g47230	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	Gma.15133.2.S1_a_at	BE803230	-	-	5e-1	At4g13860	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1617845_at, orthologous to the query gene, GmaAffx.91578.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	68.8	1617845_at	At3g54190	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.70	88.6	1614710_at	At3g54190	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1615901_at	At3g54190	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1613129_at	At3g54190	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	O.I.	H.G.	S.X.	Please select
0.57	79.8	1611483_at	At3g54190	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	1607726_at	At3g54190	hypothetical protein LOC100262331	-	8e-25	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.50	72.7	1615281_at	At3g54190	hypothetical protein LOC100241659	-	2e-17	At3g26560	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608089_at	At3g54190	hypothetical protein LOC100242497	-	8e-9	At3g63080	ATGPX5 (glutathione peroxidase 5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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