Co-expression analysis

Gene ID GmaAffx.91578.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g54190: - (HF=6e-74)
Module size 8 genes
NF 0.11
%ile 30.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.90.97GmaAffx.91578.1.S1_atCF807303--6e-74At3g54190-O.I.H.G.S.X.
0.5071.70.97GmaAffx.91578.1.S1_x_atCF807303--6e-74At3g54190-O.I.H.G.S.X.
0.4057.10.97GmaAffx.91578.1.S1_s_atCF807303--6e-74At3g54190-O.I.H.G.S.X.
0.3853.30.96GmaAffx.75978.2.S1_x_atAI900126--8e-1At3g21420oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.2939.00.97GmaAffx.82510.1.S1_atBG239314--1e-1At5g37820NIP4O.I.H.G.S.X.
0.0912.00.97GmaAffx.75978.3.S1_s_atCA937876--2e-35At1g36730eukaryotic translation initiation factor 5, putative / eIF-5, putativeO.I.H.G.S.X.
0.058.00.96Gma.2607.2.S1_atBF595916--9e-1At5g47230ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.024.50.97Gma.15133.2.S1_a_atBE803230--5e-1At4g13860glycine-rich RNA-binding protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0482600, orthologous to the query gene, GmaAffx.91578.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8996.9Os05g0482600At3g54190-WD40-like domain containing protein3e-28At3g54190-O.I.H.G.S.X.
0.6887.5Os11g0244800At3g54190-Alfin-13e-15At1g14510AL7 (ALFIN-LIKE 7)O.I.H.G.S.X.
0.5371.3Os01g0924900At3g54190-GTP-binding signal recognition particle SRP54,G-domain containing protein1e-3At5g63550-O.I.H.G.S.X.
0.4355.4Os08g0137200At3g54190-Actin/actin-like family protein3e-10At1g18450ATARP4O.I.H.G.S.X.
0.4253.9Os02g0564100At3g54190-Zn-finger-like, PHD finger domain containingprotein3e+0At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.4152.4Os02g0208200At3g54190-Hypothetical protein5e-1At1g3385040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.3948.3Os10g0114500At3g54190-Barley B recombinant like-protein B (Barley Brecombinant like-protein A)8e-4At1g14685BPC2 (BASIC PENTACYSTEINE 2)O.I.H.G.S.X.
0.3948.3Os09g0248200At3g54190-contains InterPro domain(s): IPR0109891e-3At5g48385-O.I.H.G.S.X.
0.3745.0Os03g0783000At3g54190-Conserved hypothetical protein7e-14At3g60830ATARP7 (ACTIN-RELATED PROTEIN 7)O.I.H.G.S.X.
0.3745.0Os07g0682400At3g54190-Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein3e-2At3g63450RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3644.0Os04g0101300At3g54190-MRG family protein1e-1At1g02740chromatin bindingO.I.H.G.S.X.
0.3644.0Os01g0710000At3g54190--8e-63At2g19520FVEO.I.H.G.S.X.
0.3644.0Os09g0248300At3g54190-Conserved hypothetical protein1e+0At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.3541.7Os01g0837500At3g54190-RuvB-like 1 (EC 3.6.1.-) (49-kDa TATA box-bindingprotein-interacting protein) (49 kDa TBP-interactingprotein) (TIP49a) (Pontin 52) (Nuclear matrix protein238) (NMP 238) (54 kDa erythrocyte cytosolic protein)(ECP-54) (TIP60-associated protein 54-alpha)(TAP54-alpha)4e-58At5g22330RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)O.I.H.G.S.X.
0.3440.0Os02g0126700At3g54190-Small nuclear ribonucleoprotein E (snRNP-E) (Smprotein E) (Sm-E) (SmE)2e-11At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.3440.0Os11g0602200At3g54190-SET domain protein SDG1117e-3At5g04940SUVH1 (SU(VAR)3-9 HOMOLOG 1)O.I.H.G.S.X.
0.3338.8Os02g0133300At3g54190-Structural maintenance of chromosome 3 (Fragment)1e-44At2g27170TTN7 (TITAN7)O.I.H.G.S.X.
0.2931.1Os11g0572100At3g54190-DNA ligase (EC 6.5.1.2)1e-20At5g22010AtRFC1 (replication factor C 1)O.I.H.G.S.X.
0.2831.1Os03g0858100At3g54190-CRM1 protein (Fragment)6e-47At5g17020XPO1AO.I.H.G.S.X.
0.2727.5Os09g0386500At3g54190-Zn-finger-like, PHD finger domain containingprotein6e-10At4g39100SHL1 (short life)O.I.H.G.S.X.
0.2625.6Os05g0463600At3g54190-Hypothetical protein1e+0At2g38810HTA8 (HISTONE H2A 8)O.I.H.G.S.X.
0.2219.4Os07g0405100At3g54190-Lissencephaly type-1-like homology motif domaincontaining protein1e-18At5g67320HOS15 (high expression of osmotically responsive genes 15)O.I.H.G.S.X.
0.1915.1Os01g0549400At3g54190-RNA helicase, DRH15e-19At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.1611.3Os09g0567700At3g54190-TUP1-like enhancer of split domain containingprotein4e-23At3g44530HIRA (Arabidopsis homolog of histone chaperone HIRA)O.I.H.G.S.X.
0.138.2Os08g0520300At3g54190-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein1e-9At1g17370UBP1B (oligouridylate binding protein 1B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage