Co-expression analysis

Gene ID	GmaAffx.91578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g54190: - (HF=6e-74)
Module size	8 genes
NF	0.11
%ile	30.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	82.9	0.97	GmaAffx.91578.1.S1_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.91578.1.S1_x_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	GmaAffx.91578.1.S1_s_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	GmaAffx.75978.2.S1_x_at	AI900126	-	-	8e-1	At3g21420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	GmaAffx.82510.1.S1_at	BG239314	-	-	1e-1	At5g37820	NIP4	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.97	GmaAffx.75978.3.S1_s_at	CA937876	-	-	2e-35	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	Gma.2607.2.S1_at	BF595916	-	-	9e-1	At5g47230	ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	Gma.15133.2.S1_a_at	BE803230	-	-	5e-1	At4g13860	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig14966_at, orthologous to the query gene, GmaAffx.91578.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig14966_at	At3g54190	-	-	7e-23	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig7546_s_at	At3g54190	-	-	1e+0	At1g63950	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig8530_at	At3g54190	-	-	1e-5	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig1813_s_at	At3g54190	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig9136_at	At3g54190	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig5696_at	At3g54190	-	-	7e-3	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig2811_at	At3g54190	-	-	3e-1	At1g21550	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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