Co-expression analysis

Gene ID GmaAffx.91420.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g13390: proline-rich extensin-like family protein (HF=4e-3)
Module size 6 genes
NF 0.02
%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.86GmaAffx.91420.1.S1_s_atCF807145--4e-3At4g13390proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3853.30.93GmaAffx.18316.1.S1_atAW351166--3e-1At5g62210embryo-specific protein-relatedO.I.H.G.S.X.
0.1518.70.89GmaAffx.87561.1.S1_x_atBQ473189--4e-3At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.013.40.94GmaAffx.30877.1.S1_atBE822745--1e+0At1g59640ZCW32O.I.H.G.S.X.
0.013.40.96GmaAffx.83815.1.S1_s_atBG404904--1e+0At1g04330unknown proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.90612.1.S1_atCF806337--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.299.6GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.898.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.398.2GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
5.298.1GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.998.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29319577_1130.1O.R082P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611973_at, orthologous to the query gene, GmaAffx.91420.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.31611973_atAt4g13390hypothetical protein LOC100259389-1e-1At1g15840unknown proteinO.I.H.G.S.X.
0.6081.91619663_atAt4g13390hypothetical protein LOC100243552-4e+0At4g10920KELPO.I.H.G.S.X.
0.5577.31618322_atAt4g13390hypothetical protein LOC100245826-1e-19At2g22250aminotransferase class I and II family proteinO.I.H.G.S.X.
0.5475.71622017_atAt4g13390hypothetical protein LOC100241648-4e-34At1g74910ADP-glucose pyrophosphorylase family proteinO.I.H.G.S.X.
0.5273.91620148_atAt4g13390hypothetical protein LOC100252338-3e-17At3g58830haloacid dehalogenase (HAD) superfamily proteinO.I.H.G.S.X.
0.4969.31611112_atAt4g13390hypothetical protein LOC100260186-9e-34At2g45790PMM (PHOSPHOMANNOMUTASE)O.I.H.G.S.X.
0.4666.51607162_s_atAt4g13390--3e+0At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)O.I.H.G.S.X.
0.3954.91614015_atAt4g13390--1e+0At5g53220unknown proteinO.I.H.G.S.X.
0.3853.61610900_atAt4g13390hypothetical LOC100244581-2e-1At1g78480prenyltransferase/squalene oxidase repeat-containing proteinO.I.H.G.S.X.
0.3650.71621770_atAt4g13390--1e+0At1g10030ERG28 (Arabidopsis homolog of yeast ergosterol28)O.I.H.G.S.X.
0.3446.81606648_atAt4g13390hypothetical protein LOC100257724-6e-37At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.3345.71619170_atAt4g13390hypothetical protein LOC100249188-6e-12At5g64500membrane protein-relatedO.I.H.G.S.X.
0.3345.71618490_s_atAt4g13390hypothetical protein LOC100241704-4e-4At2g29050ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)O.I.H.G.S.X.
0.3345.71621651_atAt4g13390--1e+0At4g01310ribosomal protein L5 family proteinO.I.H.G.S.X.
0.3141.31612453_atAt4g13390hypothetical protein LOC100248413-3e-46At1g11870SRS (SERYL-TRNA SYNTHETASE)O.I.H.G.S.X.
0.3141.31618539_atAt4g13390hypothetical protein LOC100267633-1e-2At2g41950unknown proteinO.I.H.G.S.X.
0.3039.41615531_atAt4g13390hypothetical protein LOC100248795-8e-20At1g77260dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2937.71608405_atAt4g13390hypothetical protein LOC100243295-4e+0At5g34881unknown proteinO.I.H.G.S.X.
0.2837.71610984_atAt4g13390hypothetical protein LOC100259256-1e+0At1g14200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2734.01607123_atAt4g13390--2e-9At1g11870SRS (SERYL-TRNA SYNTHETASE)O.I.H.G.S.X.
0.2734.01614507_atAt4g13390hypothetical protein LOC100250082-5e-1At5g12300C2 domain-containing proteinO.I.H.G.S.X.
0.2734.01610395_s_atAt4g13390hypothetical protein LOC100267880-2e-77At3g01120MTO1 (METHIONINE OVERACCUMULATION 1)O.I.H.G.S.X.
0.2734.01621053_atAt4g13390hypothetical protein LOC100258640-1e-9At1g66430pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.2632.01611536_atAt4g13390--2e-1At2g40110yippee family proteinO.I.H.G.S.X.
0.2530.51621348_atAt4g13390--3e-1At2g36070ATTIM44-2O.I.H.G.S.X.
0.2530.51610863_atAt4g13390cullin 1-2e-19At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.2124.01608942_atAt4g13390hypothetical protein LOC100257993-7e-6At5g66730zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2124.01612082_s_atAt4g13390hypothetical protein LOC100258857-3e-17At5g19450CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)O.I.H.G.S.X.
0.2124.01616315_s_atAt4g13390hypothetical protein LOC100254003-3e-16At1g20330SMT2 (STEROL METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.2022.41614765_atAt4g13390hypothetical protein LOC100242287-1e-78At3g59870unknown proteinO.I.H.G.S.X.
0.1920.91608542_atAt4g13390hypothetical protein LOC100258100-2e-2At5g57460unknown proteinO.I.H.G.S.X.
0.1313.31613891_atAt4g13390hypothetical protein LOC100251254-6e-32At1g12640membrane bound O-acyl transferase (MBOAT) family proteinO.I.H.G.S.X.
0.1111.31613718_s_atAt4g13390hypothetical protein LOC100241422-7e+0At5g11120unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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