Co-expression analysis

Gene ID GmaAffx.91420.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g13390: proline-rich extensin-like family protein (HF=4e-3)
Module size 6 genes
NF 0.02
%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.86GmaAffx.91420.1.S1_s_atCF807145--4e-3At4g13390proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3853.30.93GmaAffx.18316.1.S1_atAW351166--3e-1At5g62210embryo-specific protein-relatedO.I.H.G.S.X.
0.1518.70.89GmaAffx.87561.1.S1_x_atBQ473189--4e-3At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.013.40.94GmaAffx.30877.1.S1_atBE822745--1e+0At1g59640ZCW32O.I.H.G.S.X.
0.013.40.96GmaAffx.83815.1.S1_s_atBG404904--1e+0At1g04330unknown proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.90612.1.S1_atCF806337--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.299.6GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.898.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.398.2GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
5.298.1GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.998.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29319577_1130.1O.R082P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200833.1.S1_x_at, orthologous to the query gene, GmaAffx.91420.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4471.9PtpAffx.200833.1.S1_x_atAt4g13390hypothetical protein-1e-3At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.3559.7PtpAffx.249.414.S1_atAt4g13390--5e-1At1g22700tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.3255.2PtpAffx.110114.1.A1_atAt4g13390--6e-3At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.2747.1PtpAffx.40862.1.S1_atAt4g13390--7e-2At1g27300unknown proteinO.I.H.G.S.X.
0.1729.1PtpAffx.80529.1.A1_atAt4g13390--1e-3At5g18190protein kinase family proteinO.I.H.G.S.X.
0.0914.6PtpAffx.203651.1.S1_atAt4g13390hypothetical protein-1e+1At5g08480VQ motif-containing proteinO.I.H.G.S.X.
0.058.3PtpAffx.209579.1.S1_atAt4g13390hypothetical protein-2e-1At3g52150RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage