Co-expression analysis

Gene ID GmaAffx.91420.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At4g13390: proline-rich extensin-like family protein (HF=4e-3)
Module size 6 genes
NF 0.02
%ile 10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.86GmaAffx.91420.1.S1_s_atCF807145--4e-3At4g13390proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3853.30.93GmaAffx.18316.1.S1_atAW351166--3e-1At5g62210embryo-specific protein-relatedO.I.H.G.S.X.
0.1518.70.89GmaAffx.87561.1.S1_x_atBQ473189--4e-3At1g26250proline-rich extensin, putativeO.I.H.G.S.X.
0.013.40.94GmaAffx.30877.1.S1_atBE822745--1e+0At1g59640ZCW32O.I.H.G.S.X.
0.013.40.96GmaAffx.83815.1.S1_s_atBG404904--1e+0At1g04330unknown proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.90612.1.S1_atCF806337--2e-14At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.299.6GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.898.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.398.2GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
5.298.1GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.998.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.397.5GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29319577_1130.1O.R082P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig14167_at, orthologous to the query gene, GmaAffx.91420.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8995.4Contig14167_atAt4g13390--2e-3At3g14480glycine/proline-rich proteinO.I.H.G.S.X.
0.5572.0Contig16172_atAt4g13390--2e+0At3g12490cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.5470.3HS05C18u_atAt4g13390--1e+1At5g35470unknown proteinO.I.H.G.S.X.
0.5369.7Contig18491_atAt4g13390--1e-2At3g48425endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.4963.7Contig13079_atAt4g13390--9e-12At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)O.I.H.G.S.X.
0.4661.0Contig24192_atAt4g13390--1e+0At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedO.I.H.G.S.X.
0.4153.9HVSMEi0012N18r2_atAt4g13390--1e+1At5g18310unknown proteinO.I.H.G.S.X.
0.4153.9Contig16748_atAt4g13390--1e+0At5g65165SDH2-3O.I.H.G.S.X.
0.3849.5Contig10409_s_atAt4g13390--2e+0At1g54200unknown proteinO.I.H.G.S.X.
0.3849.5Contig23071_atAt4g13390--2e+0At1g13195zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3647.1Contig8895_atAt4g13390--7e-4At1g19600pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3647.1Contig11358_atAt4g13390--4e-2At1g11690unknown proteinO.I.H.G.S.X.
0.3240.3Contig8892_atAt4g13390flowering time control protein-4e-13At4g16280FCAO.I.H.G.S.X.
0.2935.5Contig20143_atAt4g13390--2e+0At4g30450glycine-rich proteinO.I.H.G.S.X.
0.2935.5Contig18436_s_atAt4g13390--1e+0At2g18000TAF14 (TBP-associated factor 14)O.I.H.G.S.X.
0.2835.5Contig4779_s_atAt4g13390--2e-8At3g53710AGD6O.I.H.G.S.X.
0.2835.5Contig13591_atAt4g13390--8e-47At5g01230FtsJ-like methyltransferase family proteinO.I.H.G.S.X.
0.2732.1Contig18856_atAt4g13390--2e-6At5g04940SUVH1 (SU(VAR)3-9 HOMOLOG 1)O.I.H.G.S.X.
0.2630.4Contig17640_atAt4g13390--7e+0At5g26667PYR6O.I.H.G.S.X.
0.2528.9EBpi01_SQ002_N22_s_atAt4g13390--9e+0At4g21090adrenodoxin-like ferredoxin 1O.I.H.G.S.X.
0.2528.9Contig23933_atAt4g13390--9e-1At3g15550unknown proteinO.I.H.G.S.X.
0.2427.2Contig13426_atAt4g13390--8e-6At2g45695-O.I.H.G.S.X.
0.2427.2Contig12129_atAt4g13390--2e-14At4g30020subtilase family proteinO.I.H.G.S.X.
0.2326.1Contig1762_s_atAt4g13390--4e-1At1g28330DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)O.I.H.G.S.X.
0.2021.1Contig12727_atAt4g13390--1e-7At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.2021.1Contig18140_atAt4g13390--6e-1At5g57310unknown proteinO.I.H.G.S.X.
0.1919.6HW01E20u_x_atAt4g13390--2e+0At4g23882heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.1716.9Contig18772_atAt4g13390--5e+0At5g46990invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.1615.3Contig13188_atAt4g13390--1e-4At5g58540protein kinase family proteinO.I.H.G.S.X.
0.1514.1Contig11540_atAt4g13390--3e+0At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.1412.9Contig10107_atAt4g13390--2e-1At1g17070D111/G-patch domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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