Co-expression analysis

Gene ID	GmaAffx.91256.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g02510: TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) (HF=6e-9)
Module size	17 genes
NF	0.40
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	0.95	GmaAffx.91256.1.S1_at	CF806981	-	-	6e-9	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.96	GmaAffx.1815.2.S1_at	AW201478	-	-	1e-43	At5g66470	GTP binding / RNA binding	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.96	Gma.6061.1.S1_s_at	BQ740282	-	-	1e+0	At4g32915	-	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.96	Gma.18060.1.S1_at	BU578633	-	-	8e-22	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.93066.1.S1_s_at	CF808791	-	-	7e-36	At4g29670	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.96	GmaAffx.83344.1.S1_at	BF066384	-	-	7e-58	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	Gma.16537.2.S1_at	BE191493	-	-	1e-49	At3g05350	aminopeptidase/ hydrolase	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.96	Gma.8154.1.S1_at	AW310537	-	-	5e-35	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.95	GmaAffx.32100.1.S1_at	BI471267	-	-	1e+0	At2g28110	FRA8 (FRAGILE FIBER 8)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	Gma.1323.1.S1_at	CD408818	-	-	2e-3	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	Gma.3722.1.S1_at	AW309441	-	-	8e-6	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	GmaAffx.61778.1.S1_at	AI965753	-	-	5e+0	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	Gma.16753.2.S1_a_at	BQ079784	-	-	4e-4	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	Gma.1387.2.S1_at	BG508130	-	-	3e-7	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.96	GmaAffx.70388.1.S1_at	AW509072	-	-	4e+0	At2g47810	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.96	Gma.6122.1.S1_at	BQ611634	-	-	2e-23	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.96	GmaAffx.81621.1.S1_at	BG155784	-	-	4e+0	At4g28100	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	99.1	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.2	99.0	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.2	99.0	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.8	99.0	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.8	99.0	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.7	99.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.4	98.9	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
6.9	98.8	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.7	98.7	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.5	98.7	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3	98.6	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3	98.6	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.2	98.6	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.9	98.5	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.6	98.3	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.6	98.3	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.5	98.3	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.5	98.3	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.4	98.2	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.1	98.1	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.1	98.1	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.0	98.0	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.9	98.0	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.7	97.8	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.7	97.8	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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