Co-expression analysis

Gene ID GmaAffx.91192.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g02780: emb2386 (embryo defective 2386) (HF=5e-59)
Module size 13 genes
NF 0.27
%ile 52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.60.96GmaAffx.91192.1.S1_s_atCF806917--5e-59At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.4867.70.97GmaAffx.3541.1.S1_atAW306745--3e+0At5g26070hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4057.10.98GmaAffx.91105.1.A1_s_atCF806830--6e-64At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.3548.60.98Gma.10892.4.S1_atCD403449--3e-101At2g42740RPL16AO.I.H.G.S.X.
0.3040.40.98Gma.1449.1.S1_atAY157740.1nucleoside diphosphate kinase-5e-41At4g09320NDPK1O.I.H.G.S.X.
0.2532.60.97Gma.15888.1.S1_atCD415933--5e-37At5g01650macrophage migration inhibitory factor family protein / MIF family proteinO.I.H.G.S.X.
0.2228.10.97GmaAffx.1301.31.S1_s_atBI317354--1e-11At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.2228.10.98Gma.16104.1.S1_atCD392889--4e-35At3g1608060S ribosomal protein L37 (RPL37C)O.I.H.G.S.X.
0.2126.60.97Gma.15476.1.S1_x_atCD415960--1e-56At3g5258040S ribosomal protein S14 (RPS14C)O.I.H.G.S.X.
0.1923.70.97Gma.8349.1.S1_atCD408617--9e-14At4g30220RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)O.I.H.G.S.X.
0.1923.70.98Gma.2053.1.S1_atBE209499--5e-56At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.1518.70.97Gma.1856.1.S1_atBQ628889--8e-39At3g23325splicing factor, putativeO.I.H.G.S.X.
0.0811.00.97Gma.3906.1.S1_atBU544368--1e-4At5g63460SAP domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.098.5GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.998.5GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.398.2GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.298.1GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.198.1GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.098.0GSM201105Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.098.0GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.998.0GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.897.9GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.897.9GSM201104Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.797.8GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.597.7GSM201103Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.597.7GSM201115Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.497.6GSM201114Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.497.6GSM201111Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.297.4GSM201101Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.297.4GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.197.3GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.197.3GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.197.3GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.097.2GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.097.2GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.997.1GSM201110Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.997.1GSM201100Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.897.0GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.897.0GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.897.0GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.897.0GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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