Co-expression analysis

Gene ID	GmaAffx.91013.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g51105: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.50
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.5491.2.S1_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.16998.1.A1_at, orthologous to the query gene, GmaAffx.91013.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.16998.1.A1_at	At5g51105	hypothetical protein LOC100193690	-	4e-1	At4g00840	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.17.1.A1_at	At5g51105	orange pericarp1	-	3e-31	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.7117.1.A1_at	At5g51105	-	-	5e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.7144.1.S1_at	At5g51105	-	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.14137.2.S1_at	At5g51105	hypothetical protein LOC100193311	-	2e-35	At1g77130	PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.5082.1.S1_at	At5g51105	nucleoside diphosphate kinase 4	-	6e-29	At4g11010	NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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