Co-expression analysis

Gene ID	GmaAffx.91013.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g51105: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.50
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.5491.2.S1_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1619065_at, orthologous to the query gene, GmaAffx.91013.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1619065_at	At5g51105	hypothetical protein LOC100253987	-	1e-2	At4g30470	cinnamoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.73	90.8	1616944_at	At5g51105	hypothetical protein LOC100261951	-	1e-1	At5g65400	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1614440_at	At5g51105	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1609932_at	At5g51105	hypothetical protein LOC100267022	-	2e-21	At1g08250	ADT6 (arogenate dehydratase 6)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1620412_at	At5g51105	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618362_s_at	At5g51105	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615742_at	At5g51105	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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